Cedecea neteri SSMD04: JT31_00210
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Entry
JT31_00210 CDS
T03298
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cnt
Cedecea neteri SSMD04
Brite
KEGG Orthology (KO) [BR:
cnt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cnt03016
]
JT31_00210
Enzymes [BR:
cnt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JT31_00210
Transfer RNA biogenesis [BR:
cnt03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JT31_00210
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
OSR1_C
PilZ
Motif
Other DBs
NCBI-ProteinID:
AIR03105
UniProt:
A0A089R927
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All DBs
Position
complement(44269..46203)
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AA seq
644 aa
AA seq
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MLQDNPLLAQLKQQLHSQTPRAEGVVKGTEKGFGFLEVDANKSYFIPPPQMKKVMHGDRI
SAVIHTDKDRESAEPETLIEPFLTRFVGRVQKKDDRLSIVPDHPLLRDAIQCRAARDVSH
DFQNGDWAVAEMRRHPLKGDRGFYAELTQFITFGDDHLAPWWVTLSRHNLEREAPDGVAT
EMLDDGLVREDLTALDFVTIDSASTEDMDDALYVEELADGKLQLTVAIADPTAWIAEGSK
LDGIAKVRAFTNYLPGFNIPMLPRELSDDLCSLRANVVRPVLACRMTIEQDGAIASDIHF
FAANIESKAKLVYDEVSDWLEEKGDWQPQSEAVANQIRLLQRVCLARGEWRHTHALVFKD
RPDYRFILGEKGEVLDIVAEPRRIANRIVEESMIAANVCAAIVLREKLGFGVYNVHTGFD
PASTEQLAAMLQTHGITVDAQEVLTLDGFCKLRRELDAQPTGFLDSRIRRYQSFAEISTE
PGPHFGLGLEAYATWTSPIRKFGDMVNHRLLKAIIKGETAARPAEETTIQMAERRRLNRM
AERDVGDWLYARYLSPKAGTDTRFAAEIIDVSRGGMRVRLVENGAVAFIPAPFIHAVRDE
LVCSQENGTVQIKGEAVYKVTDVIDVTIAEVRMETRSVIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaggataacccgctgctcgcgcagctaaaacagcaactgcattcccagactcca
cgcgctgaaggtgtggtaaaaggcacggaaaaagggttcggcttcctcgaagtcgacgcc
aataaaagctactttattccgccgccgcagatgaaaaaagtgatgcacggcgaccgtatc
agcgccgtcattcacaccgataaggaccgtgagtctgccgagccggagacgcttatcgag
cccttcctgacgcgttttgttggccgcgtccagaaaaaagacgatcgcctgtcgattgtg
ccggatcatccgctgttaagagatgcgattcagtgccgcgccgcacgtgacgtcagccat
gacttccaaaacggtgactgggcggtggctgagatgcgccgccatccgctgaaaggcgac
cgcggtttttacgcggaattaacccaatttattaccttcggcgacgatcatcttgcgccg
tggtgggtgacactgtcacgccataacctggaacgtgaagcgccggacggcgtggcaacc
gaaatgcttgatgatggcctggtgcgtgaagatttaaccgcgctggacttcgtcaccatc
gacagcgccagcaccgaagatatggacgatgcgctgtacgttgaagaactggccgacggc
aagctgcagctgaccgtcgccatcgccgacccaacggcgtggattgccgaaggcagcaag
ctcgacggcatcgctaaagtgcgtgcttttaccaactatctgcctggcttcaatatccca
atgctgccgcgcgagctgtcagacgatctttgctcgctgcgcgccaacgttgtccgccct
gtcctcgcctgccgcatgacgattgagcaggacggcgcgattgccagcgacattcatttc
ttcgccgccaacatcgagtctaaagccaaactggtttatgacgaagtgtctgactggctg
gaagagaaaggtgactggcagccgcagagcgaagcagttgcgaatcaaattcgcctgctg
cagcgcgtttgcctggctcgcggggaatggcgtcatacccacgccctggtcttcaaagac
cgcccggactaccgctttattcttggtgaaaaaggcgaagtgttggatatcgtggccgag
cctcgccgcatcgcgaaccgtattgttgaagagtcgatgattgcggctaacgtctgtgcc
gccatcgtgctgcgtgaaaagctgggcttcggcgtttataacgttcataccggcttcgat
cctgccagtactgaacagctggccgctatgctgcaaactcacggcatcaccgtggacgcg
caggaagtgctgaccctggacggcttctgcaagctgcgtcgcgagctggacgcacagcca
accgggttcctcgacagccgcattcgccgctatcagtcgttcgccgaaatcagcaccgag
cctggcccgcacttcggccttggccttgaagcttacgcgacgtggacttcaccgattcgt
aagttcggcgacatggttaaccatcgcctgctgaaagccattattaaaggcgaaaccgcg
gctcgcccggcggaagaaacaacaattcagatggcagaacgtcgccgcctgaaccgcatg
gcagaacgtgacgttggagactggctgtacgcccgctatctgagccctaaagccggcacc
gatacacgctttgcggcggagattatcgacgtcagccgtggcgggatgcgcgtccgcctg
gttgagaacggggcggttgcgtttatccctgcgccattcatccacgcggtgcgtgatgag
ctggtttgcagccaggaaaacggcaccgtgcaaatcaaaggcgaagccgtttataaagtg
accgacgttatcgacgtgaccatcgcggaagttcgcatggaaacccgcagcgttatcgct
cgccctgctgcctga
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