Cedecea neteri SSMD04: JT31_04165
Help
Entry
JT31_04165 CDS
T03298
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cnt
Cedecea neteri SSMD04
Pathway
cnt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JT31_04165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cnt03400
]
JT31_04165
Enzymes [BR:
cnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JT31_04165
DNA repair and recombination proteins [BR:
cnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JT31_04165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AIR03829
UniProt:
A0A089Q002
LinkDB
All DBs
Position
908231..911677
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEHYRYSLPVKAAEHRLLGELTGSACATEVAEIVERHSGPVVLIAPDMQNALRLHDEIT
QFTDNLVVNLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIMPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDNLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSSQPY
RIDFFDDEIDSLRVFDVDSQRTLEEVDAINLLPAHEFPTDKNAIELFRSQWRDRFDVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPTLFSYFPANTLLVNTGDLEASAERFWLDAH
ARFENRGVDPMRPLLPPEDLWLKTDSLFSQLKAWPRVQLKTDSLAKKAANVNLGYQALPD
LAIQAQQKAPLDSLRKFLESFTGPVIFSVESEGRREALGELLGRIKVAPKRIYRLEEAES
NGRYLTIGASEHGFIDTLRNRALICESDLLGERVSRRRQDSRRTINPDTLIRNLAELHAG
QPVVHLEHGVGRYAGLTTLEAGGITAEYLMLTYAGDAKLYVPVSSLHLISRYAGGADDNA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAMRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILEQASEGKIDILIGTHKLLQADVKW
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLFNDVENIQKAADKLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKSMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFSLYMELLENAVDALKEGREPSLEDLTNSQTEVELRMPALLPDDFIPDV
NTRLSFYKRIASAKGEHELDELKVELIDRFGILPDPARNLLDIAALRQQAQKLGVRKIEG
NEKGGTIEFAEKNHVDPVWLIGLLQKQPQHYRLDGPTRLKFFQELEDRKTRMEWVRNFMN
SLAENAAA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacactatcgctattccttacccgtaaaagccgcagaacatcgcctgctgggc
gagctgaccggttcggcctgcgccaccgaagtggctgaaatcgttgaacgccatagcggc
ccggtggtactgattgccccggacatgcagaacgcgctgcgcctgcacgatgaaatcacc
cagttcaccgacaacctggttgttaatctcgccgactgggaaacgctgccttacgacagc
ttctcgccgcatcaggaaatcatctcgtcgcgcctgtccacgctttaccagttgccgact
atgcagcgcggcgtgctgatcatgccggtgaatacgctgatgcagcgcgtttgcccgcat
agctacctgcacggccacgcgctggtgatgaaaaagggccagcgcctgtcgcgggataac
ctgcgtgcgcagctggaacaggcgggctaccgcagcgtcgatcaggtgatggagcacggc
gagtttgccacccgtggcgccttgcttgacctttatccgatgggcagcagccagccgtac
cgcatcgatttctttgacgatgaaatcgacagcctgcgcgtcttcgacgtggactcccag
cgcacgctggaagaggttgacgccatcaacctgctgccggctcatgaattcccgaccgac
aaaaacgcgattgagctgttccgcagccagtggcgcgataggttcgacgtgaagcgtgac
gccgagcatatctatcagcaggtcagtaaaggcacgctgcctgccgggatcgaatactgg
cagccgctgttcttcagcgaaccgttgccgacgctgtttagctatttcccggccaacacg
ctgctggtgaataccggcgatcttgaggccagcgcggagcgcttctggctggatgctcac
gcccgcttcgaaaaccgcggcgtggacccgatgcgtcctcttctgccgccggaagatctg
tggctgaaaaccgactcgctgtttagccagcttaaagcctggcctcgcgtgcagctcaaa
acggattcgctggcgaagaaagccgccaacgtgaacctgggttaccaggcgctgccggac
ctggccattcaggcgcagcaaaaagccccgctggacagcctgcgtaagttcctcgagtcc
tttaccgggccggtgattttctcggtcgaaagcgaaggccgccgcgaagctttgggcgaa
ctgctcgggcgcattaaagtcgcgccaaaacgcatttaccgcctggaagaagccgaaagc
aacggccgctatctgacgatcggcgccagcgagcacggctttatcgataccctgcgtaac
cgggcgcttatctgcgaaagcgacctgctgggcgaacgcgtcagccgtcgtcgccaggac
agccgccgcacgattaacccggacacgctgatccgcaacctcgcggaactgcatgctggc
cagccggtggttcaccttgagcacggcgtgggccgctacgccgggctgaccaccctggaa
gccgggggcattaccgccgaatacctgatgctgacctacgcgggcgacgccaaactctac
gtcccggtttcgtccctgcatcttatcagccgttacgccggcggggccgacgacaacgcg
ccgctgcataagctcggcagcgatgcctggtcccgtgcccgtcagaaggcggcggagaaa
gtgcgcgatgtcgccgccgaactgcttgatatctatgcgatgcgtgccgccaaagagggc
tttgcctttaagcacgaccgcgagcagtaccagctgttctgcgacagcttcccgtttgaa
accacgccggatcaggcccaggctatcaacgccgtgctgagcgacatgtgtcgcccgctg
gcaatggacaggctggtgtgtggcgacgtcggcttcggcaaaacagaagtggcgatgcgc
gccgcgttcctggcggtggagaacaacaagcaggtggcggtcctggtaccgacgacgctg
ctggctcagcagcactacgataacttccgcgaccgcttcgccaactggccggtgcgcatt
gagatgctctcccgcttccgcagcgccaaagaacagacgcaaattctggaacaggcaagc
gaagggaaaatcgacattctgatcggcacccacaagctgctgcaggccgacgtgaaatgg
cgcgacctggggctgcttatcgtcgacgaagagcaccgcttcggcgtgcgccacaaagag
cgcattaaagccatgcgggccgacgtggatatcctgacgctgaccgcaacgccaattccg
cgcaccctgaatatggcgatgagcggcatgcgcgacctgtcgattattgccacgccaccg
gctcgccgcctggcggtgaaaaccttcgtgcgcgaatacgacagcctggtggtgcgcgag
gctatcctgcgtgaagtgctgcgcggcggccaggtttactacctcttcaacgacgtcgaa
aatatccagaaagccgccgacaagctggccgagttggtgccagaggctcgcattgccatc
ggccacggccagatgcgcgagcgcgagctggagcgggtgatgaacgacttccaccaccag
cgttttaacgtgctggtgtgtaccaccatcatcgaaaccgggatcgacattccgaccgcc
aacaccatcatcatcgaacgggcagatcattttggcctcgcacagctgcaccagctccgt
ggccgcgtcgggcgctcgcaccaccaggcctatgcctggctgctaacgccgcatccaaaa
tctatgaccaccgacgcgcaaaaacgcctggaggccattgcctcgctggaggatttaggc
gccgggttcgcgttagccacccacgacctggaaattcgtggcgcgggcgagctgctgggc
gaagatcagagcgggcaaatggaaaccatcggcttctcgctttacatggagctgctggaa
aacgccgttgacgcgctgaaagaaggccgcgagccgtcgctggaagatctcaccaacagc
cagacggaagtcgagctgcgtatgcctgccctgctgccggatgatttcattcctgacgtg
aatacccgcctgtcgttctacaagcgtattgccagcgcgaagggtgaacacgagctggac
gagctgaaagtggagcttatcgaccgcttcgggattttgcctgatccggcccgcaatctg
ctggatatcgccgcgctgcgccagcaggcccagaagcttggcgtgcgtaagattgagggc
aatgaaaaaggcggcaccatagagttcgcggagaaaaaccacgtcgatccggtgtggctg
attggcctgctgcagaagcagccgcagcattaccgccttgacgggcctacccgactgaag
ttcttccaggagcttgaggacagaaaaacgcgcatggaatgggtgcgcaactttatgaac
agcctggcggaaaacgccgcggcctga
DBGET
integrated database retrieval system
