Cedecea neteri SSMD04: JT31_04345
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Entry
JT31_04345 CDS
T03298
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cnt
Cedecea neteri SSMD04
Pathway
cnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JT31_04345 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnt03019
]
JT31_04345 (rne)
03009 Ribosome biogenesis [BR:
cnt03009
]
JT31_04345 (rne)
Enzymes [BR:
cnt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JT31_04345 (rne)
Messenger RNA biogenesis [BR:
cnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JT31_04345 (rne)
Ribosome biogenesis [BR:
cnt03009
]
Prokaryotic type
rRNA processing factors
JT31_04345 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AIR03865
UniProt:
A0A089RBD4
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All DBs
Position
946651..949923
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AA seq
1090 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYASHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRDAVSAIEKRQGGVRAIIVPNDQME
TPHYSVLRVRKGEETQTLSYMLPKLHEEEMAMPSEEEYIERKRPEQPALATFVMPEVPPA
PQETAAVETAVTAVKPAAVKPKANVAEQPGLVSRFFSALKKLFAGDSAVAEVKEVKEEKA
TESDTQRQDRRNNNRRQNNRRDRGDRNERGDRNNRDRDNRDNRNNRDDRNGEGREAREPR
EGRDDNRRNRRNGQQQNTESREVRQNVATVVDDAEKQQKSRDEQQPRRERNRRRSDEKRQ
AQQEVKALQQDTNVVEQEAEQEERSPLMQRRKPRQLSQKVRFESADAPAVEETQVAQAST
ELATIALPAVVEAPVAAEQQDENAENRETTGMPRRSRRSPRHLRVSGQRRRRYRDERYPA
VSPMPLATACASPELASGKVFITYPIARPHDQVAQEEVFQSHEEVQHTNVAEAAAIEAVA
PVADVQVSEPVKAEETVVAPVAVETTHPEVIDAPVTEQPQLIAAADEAVAEETVAQAEPV
QEEAAQAVSQAAEVSEPAPVAEEAPAAAEAPVAVVEEVKPVVEEVKPVVEAAPAVEAEPV
KQAVKTEAAVAVKHATAPMTRAPAPVYTPEAPRNSEWVRPSFEFSGRGSAGGHSASQQAT
APATRPGKAD
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaagaagagttgcgtgtcgcccttgtagat
gggcagcgtctgtacgatctggacattgaaagcccgggacacgaacagaaaaaagcaaac
atctataaaggcaaaatcacccgtattgaaccaagtctggaagcggcgtttgttgattat
ggcgcagaaagacacggcttccttcctctgaaagaaatcgcccgcgaatacttcccttcg
aattacgcttcccacggccgtccgaacatcaaagacgttctgcgcgaaggtcaggaagtc
atagtccagattgataaagaagagcgtggtaataaaggtgcggccttaacgacctttatc
agccttgcgggtagctatctggttctgatgccaaacaaccctcgcgccggcggcatttca
cgtcgtatcgaaggggatgaccgtaccgaattaaaagaagcgctttcttcccttgaactg
ccggacggtatgggccttatagtacgtaccgcaggcgtgggtaaatctgcagaagcgctg
cagtgggatctgagtttccgcctgaagcactgggaagctatccagaaagccgctgaaaac
cgccctgctcctttcctgattcaccaggaaagcaacgttatcgttcgcgccttccgcgac
tacctgcgccaggacatcggcgaaatcctgatcgataacccgaaagtgcttgagctggct
cgccagcacattgccgcgctgggtcgcccggatttcagcagcaaaattaagctctacacc
ggtgaaatcccgctgttcagccactatcagattgagtcgcagattgagtccgccttccag
cgcgaagtccgtctgccgtccggtggttctatcgtcattgataccaccgaagccctgacc
gccatcgacatcaactccgcgcgagcaacccgcggcggcgatatcgaagaaaccgccttc
aacactaaccttgaagcggccgatgaaattgcccgtcagctgcgcctgcgcgacctcggc
ggcctgattgttatcgacttcatcgacatgacgccggttcgccaccagcgcgcggttgaa
aaccgtctgcgtgaagctgtgcgtcaggacagagcacgtatccagatcagccacatctca
cgctttggcctgctggaaatgtcacgtcagcgcctgagcccgtctcttggcgagtccagt
caccacgtgtgccctcgctgtagcggtaccggcaccgtacgtgacaacgaatccctgtcg
ctctccattctgcgcctgatcgaagaagaagcgctgaaggagaacaccaaagaagttcac
gctatcgtgcctgtgccgattgcctcttacctgctgaacgaaaaacgtgatgcggtaagc
gcgattgaaaaacgccagggcggcgtgcgcgcgattatcgtgccaaacgatcagatggaa
acgccacattactccgtactgcgcgtgcgtaagggcgaagaaacccagactctgagctac
atgctgcctaagctgcatgaagaagagatggcgatgccttctgaggaagaatacatcgaa
cgtaagcgtcctgagcaaccggctctggcgaccttcgtgatgccagaagtgccgcctgcg
ccgcaggaaaccgccgcggttgaaactgcagtaacggccgttaagccagccgctgtgaag
ccaaaagctaacgtagccgagcagcctggtctggttagtcgtttcttctctgcactgaaa
aaactcttcgccggcgacagcgccgtggccgaagtgaaagaagtgaaggaagaaaaagcg
actgaatctgatacccaacgtcaggatcgtcgcaacaataaccgccgtcagaacaatcgc
cgcgatcgtggcgatcgtaatgagcgcggtgaccgcaacaaccgcgatcgcgataaccgt
gacaatcgtaataaccgcgatgaccgcaacggtgaaggccgtgaagctcgcgagccgcgt
gagggtcgtgacgacaaccgccgtaaccgccgtaacggtcagcagcagaatacggaatcc
cgtgaagttcgccagaacgttgctactgtcgtagacgatgctgaaaaacagcagaagtcc
cgtgacgagcagcagccgcgtcgtgagcgtaatcgtcgtcgttctgatgaaaaacgtcag
gctcagcaggaagtgaaagcgctgcagcaggacactaatgttgttgagcaagaagccgag
caggaagagcgttccccgctgatgcagcgccgtaagccgcgccagctgagccaaaaagtt
cgctttgaatctgccgacgctcctgctgttgaagaaactcaggttgctcaggcgagcacc
gagctggcaactatcgcgcttccagctgtagtcgaagcaccagtggccgcagagcagcag
gatgaaaacgcagaaaaccgtgaaactaccggcatgccgcgtcgttcacgccgttctcca
cgtcacctgcgtgtgagcgggcagcgtcgtcgtcgttaccgtgacgagcgttacccggcg
gtatctccaatgccgttagcaaccgcctgcgcatctccggagctggcgtctggtaaagtg
ttcatcacctacccgattgctcgtccacacgatcaggttgctcaggaagaagtattccag
tctcacgaagaagttcagcacaccaacgttgctgaggccgcggccattgaagccgtagcc
cctgtcgccgacgtgcaggttagtgagcctgtgaaagcagaagagaccgttgttgcgcca
gtcgcggttgaaacaacgcatccggaagtcatcgatgcgcctgttaccgaacagccacag
ctgattgccgctgcggatgaagccgtcgccgaagaaaccgttgcacaagctgaacctgtc
caggaagaagctgcccaggcggtttcgcaggcagctgaagttagcgaacctgctccggtt
gctgaagaagcgccagcggcagcagaagcgccggtcgcagtggttgaagaagtgaagccc
gtggttgaagaagtgaaacctgtggttgaagcggcacctgcggtagaagcagagccggtg
aaacaggcggttaaaaccgaagcagcagtcgccgttaagcacgctacggcgcctatgacc
cgagctccggctccggtatacacccctgaagcacctcgcaatagcgaatgggttcgcccg
tccttcgagttcagcggtagaggttctgccggcggccacagcgcgagccagcaggctact
gcgccagcgacacgcccaggcaaagcggactaa
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