Cedecea neteri SSMD04: JT31_08545
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Entry
JT31_08545 CDS
T03298
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
cnt
Cedecea neteri SSMD04
Brite
KEGG Orthology (KO) [BR:
cnt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnt03019
]
JT31_08545
Enzymes [BR:
cnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JT31_08545
Messenger RNA biogenesis [BR:
cnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JT31_08545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
CON_HrpB
Helicase_C
HA2_N
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIR04655
UniProt:
A0A089RDN6
LinkDB
All DBs
Position
complement(1819173..1821608)
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AA seq
811 aa
AA seq
DB search
MSSLPVAAVLPEVLKALEYAPQILLNAPTGAGKSTWLPLQILQQSKLEGRILLLEPRRLA
ARNVAQRLAELLGEKPGETVGYRMRADSCVGPNTRLEVVTEGILTRLIQQDPELSGIGLV
ILDEFHERSLQADLALALLLDVQAGLRDDLKILIMSATLDNQRLQQCLPDAPVITSEGRA
FPVERRYMALPAHQRFDEAVASAVAGLMREESGSLLLFLPGVGEIQRVQEQLRERVTSDV
QLCPLYGALPLSEQRKAILPAAAGTRKVVLATNIAETSLTIEGIRLVVDAAQERVARFDA
RTGLTRLVTQRVSQASMTQRAGRAGRLEPGICLHLIAAEQAERAAAQSEPEILQSDLSGL
LLELLQWGCQDVRQLTWLDVPPDVNLTAASRLLHQLGAVDEQHRLTAQGQKMAQMGNDPR
LASMLVTAKTADEQATAAWLAAILEEPPRTQGGGDLRSLFDSRNGNWRQRATQLLKRMNG
RGGEPDISLVMPLLASGFADRIARRRGAEGRYQLANGMGAMLEQDDAMTRHEWLIAPLLL
QGSQSPDARILLALPLDVEELVARMPHLLTESDSVEWDEERGSLKAYRRRQIGRLVVKTQ
LLAKPSEEEMQQAILNGIRERGLGLLEWSVSAQQLRLRLACAARWLPEQKWPAVDDESLL
ATLEDWLLPEMRGVHSLRALKNIDLSRALSNLLAWPMRQRLDSALPTHYTVPTGSQIAIR
YDSENPPVLAVRIQEMFGEAQTPCIAEGRVPLVLELLSPAQRPLQITRDLTAFWNGAWRE
VQKEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctcattaccggttgcggccgtactgccggaagtgctgaaagcgctcgagtatgcc
ccgcaaattttgctcaatgcccctaccggcgctggtaaatctacctggctgccgctgcaa
atccttcagcagagtaagctggaaggccgcattttgctgcttgaacctcgtcgccttgcc
gcgcgcaacgttgctcaaaggctggccgaattattgggggaaaaaccgggcgaaaccgtc
ggttaccggatgcgtgccgacagttgcgtggggccgaatactcgcctcgaggtcgttacc
gaagggattttaacgcggctgatccaacaggatcccgagctgagcggcattgggcttgtg
atcctcgatgagttccacgagcgaagcctgcaggccgatcttgccctggccctgctgctg
gacgtgcaggccgggctgcgcgatgaccttaagatcctgattatgtccgcgacgctggac
aatcaacgcctgcagcaatgcctgccggatgcgccggtcattacctccgagggcagggct
ttcccggttgagcgtcgctacatggcgctgccggcacatcagcgctttgatgaagccgta
gcgagcgccgtggcgggattgatgcgtgaagaatccggatcgctgctgctgtttttaccc
ggcgtgggtgaaattcagcgcgtgcaggagcagctcagagagcgcgtgacaagcgacgtt
cagctttgcccgctgtacggcgcgttgcccctgagcgagcagcgtaaggcaattctgccc
gccgctgcgggaacgcgtaaggtggttctggcgactaacattgctgagaccagcctgact
atcgaagggatccgcctggtggtggatgcggcccaggagcgcgtcgcgcgttttgatgcc
cgcaccgggctgactcgcctggtaacccagcgcgtgagccaggcttctatgacccagcgg
gcagggcgcgccgggcgtctggagccgggtatttgtctgcacctgattgccgccgaacag
gctgaacgtgcggcggcgcaaagcgaaccggaaatcttacaaagcgatctgtccggcctg
ctgctggagctgctgcagtggggctgtcaggatgtgcgtcagctgacctggcttgatgtt
ccgccggacgtaaacctgacggccgccagccgtctcctgcatcagctaggcgccgtggac
gagcagcatcggttaaccgcgcaagggcaaaaaatggcgcagatgggcaacgacccgcgc
ctcgcctcaatgctggtgacggcaaaaacggcggatgagcaggccaccgccgcatggctt
gcggcgatcctcgaagagccgccgcgtactcagggcggcggtgatttgcggtctcttttc
gacagcaggaacggcaactggcggcagagagccactcagttactgaaaagaatgaacggg
cgaggcggcgagccggatatctcgctggttatgccgctgctggccagcggatttgccgat
cgtatcgcccggcggcgtggggctgaaggtcgctatcagctggcgaacgggatgggcgct
atgctggagcaggacgacgccatgacgcggcatgaatggctgattgcccctctgctgctg
cagggcagccagtcgccggatgcccgtatcctgcttgcgctgccgctggatgttgaagag
cttgtcgcgcgcatgccgcacctgctgacggaaagtgattcggtggagtgggatgaagag
cggggatcgttaaaagcgtatcgccgtcggcaaatcggcaggctggtggtgaaaacccag
ctgttagcgaagccttcagaagaagaaatgcagcaggcgatcttaaacgggatccgtgag
cgcgggcttgggctgctcgagtggtcggtttcggctcagcaattgcgtttacgcctggcc
tgtgccgctcgctggctgccggagcagaagtggccggcggtagacgatgaatcgctgctg
gcaacgctcgaagactggctgctgccggaaatgcgcggcgtgcactcgctgcgggcgctg
aaaaatatcgaccttagccgggcgctaagcaacttgcttgcctggccgatgcgtcaacgt
ctggatagtgccctgccaactcattacactgtgccgaccggaagccagattgcgattcgc
tacgacagcgaaaatccgccggtgctggcggtgcgtattcaggaaatgtttggtgaagcc
caaacgccctgcattgccgaggggcgcgttccgctggtgcttgagctattatctccggcg
cagcggccgctgcagataactcgtgatttaacggcgttctggaacggggcctggcgtgaa
gtacaaaaagagatgaaggggcgctacccaaaacatgtctggccggacgatccggcgaat
accgcgccgacccggcgcacgaagaagtattcctga
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