Cedecea neteri SSMD04: JT31_11295
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Entry
JT31_11295 CDS
T03298
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cnt
Cedecea neteri SSMD04
Pathway
cnt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cnt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JT31_11295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnt03021
]
JT31_11295
03400 DNA repair and recombination proteins [BR:
cnt03400
]
JT31_11295
Enzymes [BR:
cnt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JT31_11295
Transcription machinery [BR:
cnt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JT31_11295
DNA repair and recombination proteins [BR:
cnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JT31_11295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
AIR05180
UniProt:
A0A089RF93
LinkDB
All DBs
Position
complement(2391110..2395330)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDAQGAFVAKTSLIDTTIGRSILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKYEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDILKPGTADILVPRNTLLHEQWCDLLEANSVDSVKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAESSIQVKNKGSIKL
SNAKSVVNSTGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVVSEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDAKGNDVLIPGTDMPAQYFLPGKAIVQLEDGTQIHSGDALARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPIDGSDAYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVYAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSDFLEGEQAEYSRIKIANRELEANGKINVSFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEVPA
APQVTAEDATASLAELLNAGLGGNDE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggtctgttctgcgcccgt
atttttgggccagtgaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatttgtgagaagtgtggcgtagaagttacccagactaaagttcgtcgtgag
cgtatgggtcacatcgaactggcttctccaactgcccacatttggttcctgaagtctctg
ccatctcgtatcggcctgctgctggatatgccgctgcgtgatatcgagcgcgtactgtac
ttcgaatcttatgttgttatcgaaggcgggatgaccaacctcgagcgtcgtcagatcctg
actgaagagcagtatctggatgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctattcaggccctgctgaagagcatggatctggagcaagagtgtgaaact
ctgcgcgaagagctgaacgaaaccaactccgaaaccaaacgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgcccgctggtaccgctggatggtggtcgtttc
gcaacctcagatctgaacgatctgtaccgtcgcgttatcaaccgtaacaaccgtctgaag
cgtctgcttgatctggctgcgccagacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggtagatgccctgctggataacggccgtcgcggtcgtgccatcaccggctctaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaaacgtgttgactactccggtcgttctgttatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgcgaccaccatcaaagctgctaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcatttgaacctgtt
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggcagtacacgttccgctgacgcttgaagctcagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtccccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggccctaaagaagctgagcgtatttaccgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatacgaaaaagatgctcag
ggcgcattcgttgcgaaaaccagcctgatcgacacgactattggtcgttcgattctgtgg
atgatcgtaccgaaaggcctgcctttctccatcgtcaaccaggcgctgggtaaaaaggca
atctccaagatgctgaacacctgttaccgtattctgggcctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgttggt
attgatgacatggtcatcccggagaaaaaatacgagatcatctctgaagcggaagctgaa
gttgctgagatccaggagcagttccagtctggtctggtaaccgctggcgaacgctataac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggacaac
ctgcaaaccgaaaccgtgattaaccgtgacggcgtcgaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gccggtatgcgtggtctgatggctaagccagatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccactcacggtgctcgt
aaaggtctggcggataccgcactgaaaacagcgaactccggttacctgactcgtcgtctg
gttgacgttgcccaggatctggtcgttactgaagacgactgtggcaccctggaaggcatc
accatgacgccggttatcgaaggtggcgacgttaaagagccgctgcgtgaccgcgtattg
ggccgtgttaccgctgaagacattctgaagccgggcactgctgatatcctggttccacgc
aacacgctgctgcacgagcagtggtgtgacctgctggaagctaactctgttgacagcgtg
aaagtacgttccgtagtaggttgcgaaactgactttggcgtatgtgctcactgctacggt
cgcgacctggcacgtggccacatcatcaacaaaggtgaagctatcggggttatcgcggca
cagtccatcggtgaacctggtacacagctgacgatgcgtacgttccacatcggtggtgct
gcatcccgttctgctgctgaatccagcattcaggttaagaacaaaggtagcatcaagctc
agcaacgcgaagtcggttgtgaactctaccggcaagctggtagtcacttcccgtaacacc
gagctgaaactgatagacgaattcggtcgtaccaaagagagctataaagtaccttacggt
gctgtgatggctaaaggtgatggcgagcaggttgccggcggtgaaaccgtagcaaactgg
gatccgcacaccatgccggttgtctcggaagttagtggtttcatccgctttaccgatatg
atcgacggccagaccattactcgtcagaccgacgagttgaccggtctgtcttctctggtc
gttctggactctgccgagcgtactgctggtggtaaagacctgcgtccagcgctgaaaatc
gttgatgctaaaggcaatgacgttctgatccctggcaccgatatgccggctcagtacttc
ctgccgggtaaagcgattgtccagctggaagatggtactcagattcactctggtgacgcc
ctggcgcgtattccacaggaatccagcggtaccaaggatattaccggtggtctgccgcgt
gttgccgacttgttcgaagcacgtcgtccgaaagagcctgcgatcctggctgaaatcagc
ggtattatctcgtttggtaaagaaaccaaaggcaaacgccgcctggttatctccccaatc
gacggcagcgatgcttacgaagagatgattccgaaatggcgccagctgaacgtgttcgaa
ggtgaacgcgtagaacgtggtgacgtggtttccgatggtccagagtctccgcacgacatc
ttgcgtttacgtggcgtctatgctgttactcgttacatcaccaacgaagtgcaggacgtt
tatcgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgtgcgtcagatg
ctgcgtaaagcgactattgttaacgctggcagctccgacttcctggaaggcgagcaggct
gaatactcccgcatcaagatcgctaaccgcgaactggaagcgaacggtaagattaacgtg
tcctttgcacgcgatctgctgggtatcaccaaagcctctctggcaaccgagtccttcatc
tccgcggcatcgttccaggagacaactcgtgtgcttaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggccggt
accggttatgcgtaccaccaggatcgtatgcgtcgccgtgcagcgggtgaagtccctgcg
gcacctcaggtgactgctgaagacgctactgccagcctggcagagctgttgaacgcaggc
ctgggcggtaacgacgagtaa
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