Cedecea neteri SSMD04: JT31_11705
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Entry
JT31_11705 CDS
T03298
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cnt
Cedecea neteri SSMD04
Pathway
cnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JT31_11705 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnt03021
]
JT31_11705 (rho)
03019 Messenger RNA biogenesis [BR:
cnt03019
]
JT31_11705 (rho)
Transcription machinery [BR:
cnt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JT31_11705 (rho)
Messenger RNA biogenesis [BR:
cnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JT31_11705 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AIR05247
UniProt:
A0A089UM84
LinkDB
All DBs
Position
complement(2476148..2477407)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENQARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattactctcggcgaaaat
atggggctggaaaaccaagcccgcatgcgcaagcaggacatcattttctccatcctgaag
caacacgctaagagtggcgaagatatctttggtgacggtgtgctggagatactgcaggat
ggatttggtttcctccgctctgcagacagctcctacctcgccggtcccgatgacatctac
gtttctcccagccaaatccgccgtttcaaccttcgcacaggggataccatctccggtaag
attcgtccgccgaaagaaggcgaacgctactttgcgctgctgaaggttaacgaagttaac
tacgacaagccggaaaacgcccgtagcaagatcctgttcgaaaacttaaccccgctgcac
gcaaactctcgtctgcgtatggagcgtggtaacggttctaccgaagatttaaccgctcgc
gtactcgatctggcatcgccaatcggccgtggtcagcgtggccttatcgtggcaccgcca
aaagccggtaaaaccatgctgttgcagaacatcgctcagagcatcgcctacaaccaccct
gattgcgtactgatggtactgctgatcgacgaacgtccggaagaagtgaccgagatgcag
cgtctggttaagggtgaagtggttgcctctacctttgacgagccagcttcccgccacgtg
caggtcgccgaaatggttattgagaaggcgaaacgtctggttgagcacaagaaagacgtt
atcatcctgctcgactccatcactcgtctggcgcgtgcctacaacaccgtagtaccggct
tccggtaaagtactgaccggtggtgtggacgcaaacgccctgcaccgtccaaaacgcttc
ttcggtgctgcacgtaacgtggaagaaggcggtagcctgaccattatcgccaccgcgctt
atcgataccggctctaaaatggatgaagttatctacgaagagtttaaaggcaccggtaac
atggaactgcacctgtcccgtaagatcgcggaaaaacgcgtcttcccggcaatcgactac
aaccgttccggtacccgtaaagaagagctgcttactacccaggaagagctgcagaaaatg
tggatcctgcgcaaaatcattcacccgatgggcgaaattgatgccatggaattcctcatc
aataagttggcgatgaccaaaaccaacgatgacttcttcgacatgatgaagcgctcgtaa
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