Cedecea neteri SSMD04: JT31_14535
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Entry
JT31_14535 CDS
T03298
Name
(GenBank) regulatory protein CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
cnt
Cedecea neteri SSMD04
Brite
KEGG Orthology (KO) [BR:
cnt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnt03019
]
JT31_14535
Messenger RNA biogenesis [BR:
cnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JT31_14535
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
PriCT_2
Motif
Other DBs
NCBI-ProteinID:
AIR05786
UniProt:
A0A089Q3F9
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All DBs
Position
3071643..3073583
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AA seq
646 aa
AA seq
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MRLTTKLSAFITLLTGLAIIVTLVGCLLSFYNSVHDKTQQRILTVATIIDNQLVSHSPQQ
LADRFSELMMPVDITEIRLLADKSYLFLHALPEGYRPTGTQYTYRTLNVALMKHPGMTLH
LTYRDPISVYYHAMFTTTPLTAAVAFMLGVLFIAGRWLKRQLSGQELLEIRAGKIISGER
GAEVRGTVHEWPPLVSSALDTLLSDLQSAGEQRSRVDTLIRAFAAQDIKTGLNNRLFFDN
QLATLLEGQEQVGAHGVVMIIRLPDFELLKETWGNGPVEEYLFTLVNLLSTFVMRYPGAL
LARYFRSDFAVLLPHRTLKEADGIASQLLNSVDALPPTRMVDRSDMLHIGICAWRSGQTK
EQVMEHAEIATRNAAFQGANSWSVYDDKLPEQGRGNVKWRTLLEQILKQGGPRFYQKPAV
DRDGAVLHREIMCRIFDGEQEVLSAEYMPMVRQFGLSEQYDRQVVSRLLPLLNFWPEETL
AIQITVDSLIRAPFQRWLRDSLMQCEKSKRSRILFELAEADVCQHISRLQHVVRLITALG
ARVVVIQAGLTVVSTTYIKELDVELIKLHPGLVRNIGKRTENQLFVKSLVEACNGTRTRV
FATGVRTRGEWQTLIDNGVAGAQGDFIAASQPLDSNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaactctcagcttttatcacccttctcaccgggcttgcgattatc
gtaacgctggtggggtgcctgttaagcttctataactcggtccatgataaaactcagcag
cgtatcctgaccgttgccaccattattgataatcagctggtttcacattcaccccagcag
ctcgcggatcgcttcagcgaactgatgatgccggttgatattacggaaattcgcctgctg
gcggataaaagctaccttttcctgcacgctttacccgagggctatcgcccgacgggcacg
caatacacctaccgcaccctcaatgttgccctgatgaagcacccagggatgaccctgcat
ttgacctatcgtgacccgatttccgtctactaccacgcgatgtttaccactacgccattg
actgcggcggtcgcttttatgctgggggttctgttcattgcagggcgctggctcaagcgt
cagctttcagggcaggagcttttagaaataagggccgggaaaatcattagcggggaacgt
ggggctgaggttcgcggcaccgtgcatgagtggccaccgctggtgagcagcgcgctggat
accttactttcagatttgcaaagcgccggcgagcagcgcagccgtgtggataccctgatc
agggcctttgccgctcaggatattaaaaccgggctgaataatcgcctgttctttgataac
cagctcgcaacgctgctggaaggccaggagcaggtcggcgcccacggcgtggtgatgatt
attcgcctgccggatttcgagctgttaaaagagacctggggcaacggcccggtagaagaa
tatttattcactttggttaatctgctctcaacctttgtgatgcgctatcccggcgctctg
ctggctcgctatttccgcagtgattttgcggttctgctgccgcaccgtaccctaaaagag
gccgacggtatcgccagccagctgctgaattccgtcgatgcgctgccgcccacccgtatg
gttgaccggagcgatatgctgcacatcggcatttgcgcctggcgcagtgggcagacaaaa
gaacaggtgatggaacatgcggaaatcgccacccgcaatgccgctttccagggggcaaac
agctggtcggtctacgatgacaagctgccggagcaggggcgaggcaacgtgaagtggcgc
accttgcttgagcaaatcctgaagcagggcggcccacgtttttaccagaaacctgcggtc
gatcgcgacggtgccgttcttcaccgtgaaatcatgtgccgtatttttgacggcgagcag
gaagtcttgtcggcagagtatatgccgatggtcaggcagttcggtttgtcagagcaatat
gatcgccaggtggtgtcccggcttttgccgctgctgaacttctggccggaagaaacgctt
gcgattcaaatcaccgtcgactcgttgatccgtgccccattccagcgctggctgcgtgat
tctctgatgcagtgcgaaaaatcgaagcgctcacggattctttttgaacttgctgaggca
gatgtatgtcaacacatcagccgtttacaacatgttgttcgcttaatcaccgcattaggg
gcaagggtggtggttatccaggcggggttaacggtggtcagcacaacctatattaaagag
ctggatgtggagttgatcaagctgcatcctggtctggtcagaaacatcggcaagcgtact
gaaaaccagctctttgttaagagcctggttgaggcctgtaacggcacgcgaacccgtgtt
tttgcaacgggagtgaggacccgaggcgaatggcagacgctgattgataacggggtggca
ggggcacaaggtgattttatcgccgcatctcagccgcttgacagtaatgtgaaaaaatat
tcacaaagatactcggtttaa
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