Cedecea neteri SSMD04: JT31_14930
Help
Entry
JT31_14930 CDS
T03298
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cnt
Cedecea neteri SSMD04
Pathway
cnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JT31_14930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnt03019
]
JT31_14930
03009 Ribosome biogenesis [BR:
cnt03009
]
JT31_14930
Enzymes [BR:
cnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JT31_14930
Messenger RNA biogenesis [BR:
cnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JT31_14930
Ribosome biogenesis [BR:
cnt03009
]
Prokaryotic type
rRNA helicases
JT31_14930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
DeaD_C
ResIII
CMS1
LisH_WDR26
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AIR05863
UniProt:
A0A089Q0U2
LinkDB
All DBs
Position
3153441..3155381
Genome browser
AA seq
646 aa
AA seq
DB search
MTDIIETTFSDLGLHASIIQALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSGLKGLVLDEADEMLRMGFIEDVETIMAQIPA
EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFWSVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNADLLGERRLAKFAAKVQQQLESSDLDQYRALLAKIQPSAEEALD
IETLAAALLKMAQGERPLILPPDAPMRPRREFKERDDRFERRGDRNDRGPRGDRPERGGE
DRPRRERREAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPERSGERRGGRDGGGRSFGGERREGGR
GPRREGAGAGAGAGAGRSFSGERREGGRGPRREDGAATARRRFGDA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgactgatatcatcgaaaccactttttctgatctggggctgcacgcctccatcattcag
gctcttaacgacctgggctacgaaaagccatcaccaatccaggcagagtgtatcccacat
ctgctgaatggccgtgacgttctgggtatggcccagaccggtagcggtaaaactgcagcg
ttctccctgccgctgctgaacaacctcgatcctgagctgaaagcaccacaaatcctggtg
ctggccccgacccgcgaactggcggttcaggttgctgaagccatgacggatttctcaaaa
catatgcacggcgtgaacgttgttgccctttacggcggccagcgttatgacgtgcagctg
cgcgctctgcgtcagggaccacagattgttgtcggtaccccagggcgtctgcttgaccac
ctgaaacgcggcacgctgaacctgtccggccttaaaggtctggttctggacgaagctgat
gaaatgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggct
gaacatcagaccgcgctgttctccgctaccatgccggaagcaattcgtcgcattacccgt
cgcttcatgaaagatcctcaggaagtgcgcattcagtccagcgtaaccactcgtcctgac
atcagccagagtttctggtctgtttacggcatgcgtaaaaacgaagcgctggttcgtttc
ctggaagcagaagactttgatgcagctatcatcttcgtgcgtaccaaaaacgcgaccctg
gaagtagctgaagcgctggagcgcagcggttacaacagcgccgcgctgaacggtgacatg
aaccaggcgctgcgtgagcagactctggagcgtctgaaagatggtcgtctggacatcctg
atcgcgaccgacgttgcggcccgtggcctggacgtggagcgtatcagcctggttgttaac
tacgacatcccgatggactccgagtcttacgttcaccgtatcggtcgtactggccgtgct
ggccgtgctggccgtgcgctgctgttcgttgagaaccgtgagcgccgcctgctgcgcaac
atcgagcgcaccatgaagctgactatccctgaagtagagctgccaaacgcagatctgctg
ggcgagcgtcgtctggctaaattcgccgctaaagttcagcagcagctggaaagcagcgat
ctggatcagtaccgtgcgctgttggcaaaaattcagccttccgctgaagaagcgctggat
atcgaaacgctggctgcagccctgctgaaaatggctcagggtgagcgtcctctgattctg
ccaccagatgcaccaatgcgtccacgtcgtgaattcaaagagcgtgacgatcgtttcgaa
cgtcgcggcgaccgtaatgaccgtggcccgcgtggtgaccgtccagagcgtggtggtgaa
gatcgtccacgtcgtgagcgtcgcgaagctggcgatatggaactgtatcgcatcgaagtg
ggccgtgatgatggtgttgaagttcgtcatatcgttggcgctatcgctaacgaaggcgac
atcagcagccgttacatcggtaacatcaagctgttcgggacccactccaccatcgagctg
ccgaaaggcatgccgggtgaagttctgcagcactttacccgtactcgtattctgaacaag
ccgatgaatatgcagctgctgggtgatgctcagcctcgtccagagcgcagcggtgaacgc
cgtggcggtcgcgacggcggcggtcgtagcttcggtggcgagcgtcgtgaaggcggtcgt
ggtccacgtcgcgaaggcgctggtgcaggagccggtgccggggctggtcgtagcttcagc
ggtgaacgccgtgaaggtggccgtggcccgcgtcgtgaagacggtgccgcaaccgcacgt
cgtcgctttggtgatgcataa
DBGET
integrated database retrieval system
