Caldicellulosiruptor obsidiansis: COB47_0407
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Entry
COB47_0407 CDS
T01293
Name
(GenBank) RNA methyltransferase, TrmA family
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cob
Caldicellulosiruptor obsidiansis
Brite
KEGG Orthology (KO) [BR:
cob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cob03009
]
COB47_0407
Enzymes [BR:
cob01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
COB47_0407
Ribosome biogenesis [BR:
cob03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
COB47_0407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_15
Methyltransf_25
MTS
Methyltransf_4
Ubie_methyltran
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_11
RrnaAD
PCMT
DREV
bCoV_viroporin
Motif
Other DBs
NCBI-ProteinID:
ADL41741
UniProt:
D9TIA9
LinkDB
All DBs
Position
485198..486526
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AA seq
442 aa
AA seq
DB search
MKIDTLNHQAQGIARIGGFVVFVDNVLVDEVVKIKIEEVKKEYARAKLIKILEKSPHRKQ
PECPYYYLCGGCHLMHAKYQYQLSLKKLLVEDAFRRIGKLNPRINDVIGMEKPFRYRNKT
ALPVGEDYKNPQIGFYKKMTHDIVDIDYCLIQHEVCDDVIKGMKDLIRKYNIEVYSEKKH
QGVLRHIVVRNSFAFNEMMLILVCTKVPEDLENIKKDILNKFPNIKSLYVNLNPKRTNVI
LGEEDILIWGSNTIKDKIGNLIFEISPKSFFQVNSIQTELLYNQVVKYLRNIDAEVVFDV
YSGIGTISMFVAPFCKKVYSIEIVEDAVEDAKKSSKNNGISNIEFICANAEIEIPKLMEK
GIIPQVVILDPPRSGCEKALLESLIKQKIPNIIYVSCNPSTLARDSSILCSNGYEIVEVQ
PVDMFPQTFHVECVVLMSRVDK
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaattgacacgctcaatcaccaggcacagggcattgcaagaattggtggatttgtg
gtgtttgttgacaatgttcttgtggatgaggttgtaaagatcaaaatagaagaagtaaaa
aaagaatatgccagagcaaaattgataaaaattttagaaaaaagtccccatagaaaacag
ccagaatgtccttattattacttatgtggtggatgtcatttgatgcatgcaaaatatcag
tatcaattgagtcttaaaaagcttcttgttgaggatgcttttagacgaatagggaaacta
aaccccaggataaatgatgtaattggaatggaaaagccttttagatacagaaacaaaact
gcacttccagtaggtgaagattataaaaatcctcaaataggattttataaaaagatgaca
catgacattgttgatatagattactgtcttattcagcatgaggtttgcgatgacgtaata
aaaggtatgaaagatctgatccgaaagtacaatattgaggtgtatagcgaaaaaaagcat
cagggagttttgagacacattgttgttagaaactcatttgcatttaatgagatgatgctc
attcttgtttgtacaaaagtacctgaggatttggagaatattaaaaaagatattttaaac
aagtttccaaacattaaatcactttatgtaaacttgaatcctaaaaggacaaatgtaata
ttgggtgaggaagatatattgatctggggaagtaacacaataaaagataagatagggaat
ttaatatttgagatttctccaaaatcattttttcaggtaaattctattcaaacagagcta
ctttacaatcaggtagtgaaatatctaaggaatattgatgcagaagttgtgtttgatgta
tactctggaataggtaccatttcgatgtttgtcgctcctttttgtaaaaaagtatactcc
atagagattgttgaagatgcagttgaagatgcaaaaaagagcagcaaaaacaatggtata
tcaaatattgagtttatatgtgcaaatgctgagattgaaattccaaagcttatggaaaaa
ggaattatacctcaggttgtgatacttgaccctcctcgaagtggatgtgaaaaagctctc
ttagaaagcttgataaagcagaagattccaaacataatttatgtatcttgcaatccatca
acacttgcaagggatagcagtattctttgttcaaatggttatgaaattgtggaagttcag
cctgttgatatgtttccacagacatttcatgtagagtgcgtggtgttgatgtcaagggtg
gataaatag
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