Caldicellulosiruptor obsidiansis: COB47_0594
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Entry
COB47_0594 CDS
T01293
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cob
Caldicellulosiruptor obsidiansis
Pathway
cob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
COB47_0594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cob03400
]
COB47_0594
Enzymes [BR:
cob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
COB47_0594
DNA repair and recombination proteins [BR:
cob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
COB47_0594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
ADL41912
UniProt:
D9TIT0
LinkDB
All DBs
Position
699556..702987
Genome browser
AA seq
1143 aa
AA seq
DB search
MLKVLEKLESFKRLEEDVVKKSLPLVVTGVGEMGKALVVKSLCEKFNKKALFITTQRAKL
EWERRFMSLFNSVVSLQERENPFVVSFAKSRDSEINRMEQFVKIFEDGFDVLILSSQNLF
EKYTNLKFGYIHLTEGLDIQLEILIEKLLKFGYERVKTVEKKGQFSQKGGIVDIYPVASR
YPVRVEFFGDTIDTIRFFDVETQKSFERIDSVKIYKAIEWDLEEDFSEGFKRVKEDYKKM
KLKLKEDGRKNLEESFREVVEELQLNVERLYPYYYQQFFSVVDIFDECLVFVDEYNQVYS
SLKASEQEIQEMFSDLLEKGFVLPKMAECYFTMSEVLEKLSSSIILQTFVSVVKELELKD
IISFNFLREIPSYNGQKEILIDDLKYYMSKGYTINIFAGSRTSLEDLADALLREDIQFSE
AEEPEVERTGVYLIARSIEKGIEVQDLKWVYLSFFHLEKKKESETKKRVKSKKDAFYTIE
DLKPGDFVVHRTYGIGKFLGFEKITVEGTTKEYVKLEYANSSYLYVPTTNLDMIEKYIGT
DDVQPKLSRLGSQEWQKQKQKVRKSLEIVAKDLVELYAKRQLGQGFKFSKDTVWQKEFEE
KFPYTETEGQLQAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVL
VPTTILAQQHYMTFSARMKDFPVTIEVLSRLKSETQQKKIIKGLRKGTIDIVIGTHRLLS
SDVKFKDLGLLIIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSV
IEDPPEDRFPVQTFVLEYNERIIKEAILKEISRGGQVFYLYNRVKDIQEVAAKLQNLVGD
SVKIACAHGQMEEEELEEVLIDFIEGRYDVLVCTTIIESGVDMPNVNTLIVEDSDRLGLA
QLYQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGSGFKIAMRDLEIRG
AGSIVGKLQHGHINSVGYDMYIRLLSEEIRRLKGENVQPEIEPQIDIKVSAFISSSYIDD
EKERINMYKKISSIESKNDVNDIYDELIDRFGDVPKEVDNLIKVAYLKCLCKKAGIISVL
QLQEGLFKLQFLNREMLEAAKERFLQKGLSCSQNKDDTLQVLVANNWLDTLVALLEDLEQ
KSF
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaaggttttagaaaaacttgaaagtttcaaaaggcttgaagaagatgtagtaaaa
aagagccttcctcttgttgttacaggcgttggtgagatggggaaggcgcttgtggttaaa
tctctatgtgaaaagtttaacaaaaaggcgttgtttattacaactcaaagagcaaagctt
gaatgggaaagaaggtttatgagcctttttaatagtgtggtgagtctacaagagagagaa
aatccttttgtggtatcttttgcaaagagcagagattctgaaattaacagaatggagcaa
tttgttaagatttttgaggatggttttgatgttctcatattaagtagccagaaccttttt
gaaaagtacacaaatttaaagtttggttatatccatctcacagaaggtcttgacattcag
cttgaaatccttatagaaaagcttttaaaattcggatatgaaagagtgaaaactgtcgaa
aagaaaggacagttttcgcaaaagggtggcatagttgatatatatcctgtagcaagtagg
taccctgtgagggttgagttttttggagatacgatagacacaattagattttttgatgtt
gaaactcagaagtcttttgaaagaatagatagtgtgaagatttacaaggcaattgagtgg
gatttggaagaggacttttcagaaggtttcaaacgcgtcaaggaagactacaaaaaaatg
aaattgaaattgaaggaagatggcagaaaaaatttagaggagagtttcagagaggttgta
gaagaacttcaactaaatgttgaaagactgtatccatattactaccaacaatttttctca
gttgttgatatttttgatgaatgtcttgtctttgttgacgagtacaaccaagtctatagc
agcttgaaagcttccgaacaagagatacaagagatgttttcagaccttttagaaaaagga
tttgtgcttccaaaaatggcagagtgttattttaccatgagcgaagttttagaaaagctt
tcgagttcgataattcttcaaacatttgtctcagttgtaaaagagcttgaactcaaagat
atcatttctttcaattttcttagagagattccttcttataatgggcaaaaagaaatttta
atagacgatttgaaatattacatgtctaaaggctataccataaacatctttgcaggaagt
cggacatcacttgaggacttggcagatgcacttttaagagaagatatacagttttctgag
gctgaagaaccagaagtagaaagaacgggagtgtatctaatagcccggtctattgaaaag
ggcattgaagtgcaagatctcaaatgggtttatctttcgtttttccaccttgaaaagaag
aaggaaagtgagacaaaaaagagggtaaaatctaaaaaggatgccttttatactattgaa
gatttaaaacctggcgattttgttgtgcacaggacatatggtattggcaaattcttgggg
tttgaaaagattacagttgagggtacaacaaaagagtatgtgaagcttgaatatgccaac
tcttcttatttgtatgttccaacgacaaacttggacatgattgagaagtatattggaaca
gacgatgtacagccaaaactgtcaaggcttgggtcacaagagtggcagaaacagaaacaa
aaggtaagaaaatctcttgagattgtggcaaaagacttggttgagctttatgcaaaaaga
cagcttgggcaaggttttaaattttcgaaagatactgtgtggcaaaaagagtttgaagag
aagttcccatatacagagacagagggtcagcttcaggccatagaagagattaaaagggat
atggaaagtgaaaagccgatggataggatactttgcggcgatgttgggtatggcaagaca
gaagttgcaatgagagcagccttcaaagcagtgatggattcaaaacaggtggcagtactt
gttcccacaaccattcttgcgcagcagcattacatgacattttctgcacgaatgaaagat
tttccagtaacaattgaggttctctcacgtttaaaaagtgagacgcagcaaaagaaaata
ataaagggtttgaggaaaggcacaattgacattgtaattggaacgcacaggctattgtca
agcgatgttaagtttaaagaccttggtcttttgattattgatgaagagcacaagtttggc
gtagaagcaaaagagaagattaaaaagctaaaaacaaatgttgatgttctaaccctcacc
gcaacgcctataccaaggacacttaacatggcacttttaggaattagggatttgagcgtg
attgaagacccaccggaagacaggtttccagtgcagacatttgtgcttgagtacaatgaa
aggataataaaggaggctattttgaaagaaatttcaagaggaggtcaggtattttatctt
tacaacagggtaaaagacatacaagaagtggcagctaaacttcaaaaccttgtgggcgat
agtgtgaaaattgcgtgtgctcatggtcagatggaagaagaggagcttgaagaggtcttg
attgattttattgagggtaggtacgatgtgcttgtgtgtacaacaattatagagtctggg
gttgacatgcccaacgtcaatacacttattgtggaagacagcgatagacttggtcttgct
cagctttatcagctaagaggaagagtaggcaggtcttcgaggcttgcatatgcatatttt
acgtttagaaaagacaaggtgctgtctgaacaggcacaaaaaagacttgctgcaataaag
gagtttacagaacttgggtctgggtttaaaattgctatgagggatcttgagataaggggt
gctgggtctattgttggaaaacttcagcatgggcatataaacagtgttggatatgacatg
tatataagacttctttcagaagagataaggcgccttaagggtgaaaatgtacagccagag
attgaacctcagatagatataaaggtcagtgcgtttattagtagcagttacattgatgat
gaaaaagagagaattaatatgtacaaaaagatttcgtcaatcgagtcaaaaaatgatgta
aatgacatttatgatgaactaatagacaggtttggggatgtgccaaaggaggttgataat
ctgataaaggttgcatatttgaaatgtttgtgcaaaaaagcagggataataagtgttttg
cagcttcaagaaggtctttttaaacttcagtttttgaaccgtgaaatgcttgaagctgca
aaggagaggtttttacagaaaggactttcatgttcacaaaacaaagatgatacgttgcag
gtcttggttgcaaataactggcttgataccttggtagctcttttagaggatttggagcaa
aaaagtttttaa
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