Caldicellulosiruptor obsidiansis: COB47_0666
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Entry
COB47_0666 CDS
T01293
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
cob
Caldicellulosiruptor obsidiansis
Pathway
cob02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cob00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
COB47_0666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cob03021
]
COB47_0666
Transcription machinery [BR:
cob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
COB47_0666
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
DUF4423
Motif
Other DBs
NCBI-ProteinID:
ADL41979
UniProt:
D9TIZ7
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All DBs
Position
777416..778669
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AA seq
417 aa
AA seq
DB search
MTEQNMENNEVKNLNDQNINKETGSEQQQEVEKQLLESQKNENQEKQPAKKSTENKSEGK
KMSEEKKTLIREKVRELISLGQSKGFLTYSEIQEILDKVELDASQVESIYDTLESMGIDV
VDDRVSEEELLKDDLENLPEGIAIDDPVRMYLKEIGKIPLLTPEEEIELAKRIEQGDEEA
KKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWI
RQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVR
EILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNERE
KKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFLE
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgacagagcagaacatggaaaataatgaggtgaaaaacctcaatgaccaaaatataaat
aaagagactggaagcgagcagcagcaagaagttgaaaaacaattgcttgaatcacagaaa
aatgaaaatcaagaaaaacagcctgctaaaaaaagcacagaaaacaaatcggaaggcaag
aagatgagcgaagaaaaaaagactcttataagagaaaaggtcagagaacttatatctctt
ggtcagagcaaagggtttttgacatattcagaaatacaggagattcttgacaaggtagaa
cttgatgcaagccaagttgaaagtatctatgataccttggagagcatgggaattgatgtt
gtagacgacagagtatcagaggaggagctattaaaagacgatttggaaaatctgcctgaa
ggtattgctatagatgaccctgtcaggatgtatttgaaggaaattggcaagattccgctt
ttgacccctgaagaggagattgaacttgcaaagaggatcgagcaaggcgatgaagaggct
aaaaagaggcttgctgaggcaaatttgaggcttgttgtcagcattgcaaaaaggtatgtg
ggaagaggtatgctctttttggaccttatccaggaaggtaatcttggtcttttgaaggct
gttgaaaagtttgactacagaaaagggtataaattttccacatatgcaacgtggtggata
aggcaggcaataacaagggcaattgcagaccaggcaagaactataagaattcctgttcac
atggttgagacaattaacaaattagtaagagtgtctcgccagcttttacaagaaaaggga
agagagccaacacctgaagagattgcaaaagagatgaacatgccagttgaaaaagtgaga
gagattctaaagattgcacaagagccggtgtcacttgagactccaattggtgaagaggaa
gatagccacttgggcgactttatacccgatgatgatgctcttgcgccatctgaagctgct
gcatattctatgttaaaagagcagctattagaggttttagactcacttaacgagcgtgaa
aagaaagtcttaaaactcagatttggccttgaagacggcagggctcgcaccttagaagag
gttggcaaagaattcaacgtcacaagagagaggatccgccaaattgaggcaaaagcactg
agaaagttaagacatccaagcaggagtaagaagcttaaggattttttggagtaa
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