Caldicellulosiruptor obsidiansis: COB47_0717
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Entry
COB47_0717 CDS
T01293
Name
(GenBank) RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily
KO
K03091
RNA polymerase sigma-E/F/G factor
Organism
cob
Caldicellulosiruptor obsidiansis
Brite
KEGG Orthology (KO) [BR:
cob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cob03021
]
COB47_0717
Transcription machinery [BR:
cob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
COB47_0717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_3
GerE
HTH_31
HTH_23
HTH_28
KORA
MarR_2
Sigma70_ECF
DUF134
HTH_26
HTH_7
HTH_37
Phage_antitermQ
HTH_38
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
ADL42030
UniProt:
D9TJ48
LinkDB
All DBs
Position
835336..836103
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AA seq
255 aa
AA seq
DB search
MNKVEICGVNTSTLPVLSHEEKFELLKRMKEGDKEARRIFIEGNLRLVLSVVQKFANRGE
NLDDLFQVGCIGLIKAIDNFDLSQNVKFSTYAVPMIIGEIRRYLRDNNSMRISRSLKDTA
YKALKIKEKYINKNHREPTLEEIAKELSITKEELVFALDSIQEPISLYEPVFQDSSDTMY
VVEKLCDQKSCENVWLEEISLKDALSKLTKREKEILYLRYYKGKTQMEVARIVGISQAQV
SRIEKSAIGHIKKYI
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
ttgaacaaggtagaaatttgtggtgtgaacacatcaactctccccgttttgagccatgag
gaaaaattcgagcttttaaagaggatgaaagaaggagacaaagaagcgcggagaattttt
attgaggggaatttgaggcttgttttgagtgttgtccaaaagtttgcaaacaggggcgag
aacttagatgatttgttccaggtaggttgtattggtcttataaaagcgattgataatttt
gatctttcacaaaatgtcaagttctccacatatgcagtgccgatgataatcggagagata
agaaggtatctgagagataacaactctatgagaatttcaagatcgttgaaagatacagcc
tataaagctttgaaaataaaggaaaagtatataaataaaaaccacagagaaccaacattg
gaagagatagcaaaagaactctcaatcaccaaagaagagcttgtttttgcgcttgattcc
attcaggagccgatatctttgtatgaacccgtatttcaagatagcagtgacacaatgtat
gttgtggaaaaactgtgcgaccagaaatcatgcgaaaatgtttggcttgaggagatatcg
ttgaaggatgccctcagcaaactgacaaagcgtgaaaaagaaattctgtatttgcgttat
tataagggaaaaactcagatggaggtagcaagaattgtgggaatttcacaggcacaggtg
tcaagaatcgaaaaaagtgcaataggacatatcaagaagtatatctaa
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