Caldicellulosiruptor obsidiansis: COB47_1468
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Entry
COB47_1468 CDS
T01293
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cob
Caldicellulosiruptor obsidiansis
Pathway
cob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COB47_1468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cob03019
]
COB47_1468
03016 Transfer RNA biogenesis [BR:
cob03016
]
COB47_1468
Enzymes [BR:
cob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
COB47_1468
Messenger RNA biogenesis [BR:
cob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
COB47_1468
Transfer RNA biogenesis [BR:
cob03016
]
Prokaryotic type
tRNA degradation factors
COB47_1468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
S1_RRP5
RIP_P131-like
OB_RRP5_4th
SPATA25
TssR_C
Motif
Other DBs
NCBI-ProteinID:
ADL42757
UniProt:
D9TL75
LinkDB
All DBs
Position
complement(1582632..1584737)
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AA seq
701 aa
AA seq
DB search
MESKIYKMELAGRELSFEIGKYALLANGAVLARYGDTAVLVTACASEKPREGINFFPLTV
DYEERLYSVGKIPGGFIKREGKPSEKAILSARLIDRPIRPLFPKDFYHDVSVIATVLSVD
PDNPPDVLAMLGSSVALSISDIPFEGPTGSVLVGYVDGKIVINPTAKEREVSKLHLVVSG
TKDRVMMIEAGAKEVPEDIMIEAILIAQEEIKKIVEFIEEIVKEVGKPKMEYQKRVVPEE
IKQKVREIAYDKVYQYVQIPDKVERDKKLDELKEEVFKAFEGETEETLLLVDDALYNLEK
EIVRKMIADEGKRPDGRKFDEIRPLYAEVGILPRTHGSALFKRGYTQVLTVATLGTKGEM
QFLDGLEEEEAKRYMHHYNFPPFSTGESKPIRGPGRREIGHGALAERALEPVIPSEDEFP
YTIRLVSEVLTSNGSTSQASVCGSTLALMDAGVPIKAPVAGISIGLITKDDDSFILLTDI
QGIEDFFGDMDFKVAGTREGITAIQLDIKIHGLTREIIEKALYQAKEARLKILDFMQTVI
DKPRSELSPYAPKIFKTTVDPEKIRDIIGPGGKMINKIIAETNVKIDIEPDGRIFVAAPD
DISGNRAISMIEGIGREIEVGQFFLGKVTRTASYGAFVEIYPGKEGLVHISQLDERRLKS
VDEVVKVGDLVLVKVIGIDKLGRLSLSRKEALNVTYSRKAK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
ttggagagtaaaatttacaaaatggaacttgcgggaagagagctcagctttgagattggg
aaatatgctcttttggcaaacggggctgtgcttgcaagatatggtgacacagctgtgctt
gtcactgcatgtgcttctgaaaagcccagagaaggtataaactttttcccgcttacagtt
gactatgaggaaaggttgtactcggttgggaaaattccgggcggatttataaagagagaa
ggcaaaccgtcagaaaaagcaattctttctgcaaggctgatagacagacctataagaccg
cttttcccaaaagatttttatcatgatgtctctgttatagccacagtactgtcggttgac
cctgacaatccaccggatgttcttgcaatgcttggttcatctgttgcactgtcaatctct
gatataccatttgaagggccaactggttctgtgcttgttgggtatgtggatggaaagatt
gttataaaccctacggctaaagaaagagaagtgagcaagcttcatcttgttgtgtcgggg
acaaaagacagggtgatgatgatagaagctggtgcgaaagaagttcctgaggacattatg
attgaggctatattgatagcacaagaagagattaaaaagattgttgagtttattgaggaa
atagtaaaagaagttggtaaaccgaaaatggagtatcaaaagagggttgtaccagaggag
ataaaacaaaaggtacgtgagattgcatatgacaaggtttatcagtatgtgcagatacct
gacaaggttgaaagggataagaagcttgatgagcttaaagaagaagtgttcaaagctttc
gaaggtgaaacagaagaaactcttttacttgtggatgatgcgctttataaccttgaaaaa
gagattgtaagaaagatgattgcagatgaagggaaacgccctgatggtagaaagtttgac
gaaataagaccgctgtatgctgaggttggtattttgccaagaactcacggttctgcgctg
tttaaaagaggttacactcaagttttgacagttgctactcttgggacaaaaggtgagatg
caatttttagacggtcttgaagaagaagaggcaaaaaggtatatgcatcattataacttc
ccaccattctctacaggtgaatcaaaacctataagaggtccaggaagaagagagattgga
catggtgcattggctgaaagggcacttgaacctgttattccttcagaggatgaatttcct
tatacaattcgacttgtatctgaggttttgacatctaacggttcaacatcacaggcaagt
gtatgcggcagtactcttgctcttatggatgctggtgtgccaattaaagcgcctgttgca
ggaatttctatcggccttattacaaaagacgacgacagttttattttacttactgacatt
caaggtatagaagacttctttggagatatggactttaaggtagcagggacccgagaaggt
attactgcaattcagcttgacataaaaatccatggacttacaagagaaattatcgaaaag
gcactctatcaggcaaaagaagcaagacttaaaattttagattttatgcaaactgtaatt
gacaagccaagaagcgagctttccccttatgctccaaagatattcaaaactacagttgat
cctgaaaagattcgagacataattggacctggtggaaagatgataaataaaatcatcgca
gagacaaacgtaaagattgatatagaacctgatggaagaatatttgttgcggcacctgat
gatatttctggtaacagggcaattagcatgattgagggaattggtcgtgagattgaggtt
gggcagtttttccttggcaaggtgacaagaactgcatcttatggagcatttgttgaaata
tatcctggcaaggaaggacttgtgcatatatctcaattagatgagagaagattaaagtct
gtagacgaggttgtaaaagttggagatttggtgcttgtaaaggtaatagggattgacaag
cttggcagactttcactttcacgaaaagaagcactgaatgtcacatactcaagaaaagca
aaataa
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