Caldicellulosiruptor obsidiansis: COB47_1525
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Entry
COB47_1525 CDS
T01293
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cob
Caldicellulosiruptor obsidiansis
Pathway
cob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COB47_1525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cob03019
]
COB47_1525
Messenger RNA biogenesis [BR:
cob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
COB47_1525
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
DUF6779
Tmemb_9
OmpH
VTT_dom
Cache_3-Cache_2
MG280
KH_KhpA-B
Cas3_HD
DUF6635
Motif
Other DBs
NCBI-ProteinID:
ADL42813
UniProt:
D9TLD1
LinkDB
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Position
complement(1632481..1634046)
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AA seq
521 aa
AA seq
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MQKISETLKLVVTIVIALVASMVAFFLGYLYRKKIAEKTIKSAEQEAQRIVEEARKQAEA
YKKEATLLAKEEIHRARSEFDREVRERRAELQRFERRLIQKEEMLDKKMASVEEKEEQLN
QKLKDIQKLQEEIELLKQKEQEELQRISGLTQEEAKQIILKSVEQDVKHDVALMIKELEQ
QAKEEADKKAREIIATAIQRYSSDYVAENTVSVVTLPNDEMKGRIIGREGRNIKTFETVT
GIDLIIDDTPEAVILSGFDPIRREIAKLTLEKLILDGRIHPARIEEMYEKAKREVENKIR
EEGERVVFELGIHNLHPELIKLVGKLKYRTSYGQNVLAHSIEVANIAGIMAAELGLDQSI
AKRAGLLHDIGKAVDHEMEGSHALIGYELAKKYKETNPDVLEAIGGHHGEMETRSIYNVL
IQAADSVSAARPGARRESLESYIKRLQKLEEIANSFDGVEKAYAIQAGREIRIMVKPDHV
SDDDIVIMAREIVKRIESELDYPGQIKVNVIREVRAVEYAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaagattagtgagacattgaaacttgtagttactatagtaattgctttggtagca
tcaatggttgcctttttcttgggctatttatatagaaagaagattgctgagaagaccata
aaaagtgctgaacaagaagcccaaagaattgttgaggaggccagaaaacaggccgaggca
tacaaaaaggaggcaacactccttgcaaaagaagagatacacagagcaaggagcgaattc
gacagggaagtaagagagcgaagagcagagcttcagaggttcgaaagaagacttattcaa
aaagaagagatgcttgacaaaaagatggcgtctgtagaggaaaaagaagagcagctcaat
cagaagctgaaggatattcaaaaacttcaagaggagatcgaacttttaaaacaaaaagag
caggaagagctgcaaagaatttctgggctcactcaggaagaagcaaaacaaattatactc
aagagtgttgaacaggatgtcaaacatgatgttgcgctcatgataaaagagcttgaacag
caagcgaaagaagaagctgacaaaaaagcccgagaaattattgctactgctatccagcgc
tattcatcagactatgttgcagaaaacactgtttctgttgtgacactcccaaatgatgag
atgaaaggtagaatcataggtagagaaggtagaaatattaagacatttgagactgttaca
ggaattgaccttataattgacgacacacccgaggcagtaatattatcagggtttgacccg
ataaggcgtgagatagcaaaactcacgttagaaaagcttattttagatgggcgaatacat
cctgcgcgaattgaagaaatgtacgaaaaagcaaaacgagaggttgagaataagattcga
gaagaaggagaaagggttgtatttgagcttggaattcacaacttgcatccagaactcatt
aagctcgtagggaaacttaagtacagaacaagctatggtcaaaatgttcttgcacattct
attgaggtagcaaacatagcaggtatcatggcagcagagctcggtcttgaccagagtatt
gcaaagcgtgcagggcttttgcatgacattggcaaagcagttgaccatgaaatggaaggg
tcacatgccctgattggttatgagcttgctaaaaaatacaaggagacaaacccggatgtc
cttgaagcgattggtgggcatcacggtgagatggaaacaaggtcaatttacaatgtgtta
attcaggctgctgactctgtttcagcggcacgaccaggagctcgaagagaatctcttgag
tcttatatcaaaagacttcagaagcttgaagaaattgcgaattcttttgatggtgttgaa
aaagcttatgcaattcaagcaggaagagagataagaataatggtaaagcctgaccatgtg
agtgacgatgatattgttataatggcaagagagatagtaaagagaattgaaagtgagctt
gattatccaggtcagataaaggtaaatgtaatcagagaagttcgagcagttgaatatgca
aaatga
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