Caldicellulosiruptor obsidiansis: COB47_1619
Help
Entry
COB47_1619 CDS
T01293
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
cob
Caldicellulosiruptor obsidiansis
Pathway
cob03030
DNA replication
cob03430
Mismatch repair
cob03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COB47_1619
03430 Mismatch repair
COB47_1619
03440 Homologous recombination
COB47_1619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cob03032
]
COB47_1619
03400 DNA repair and recombination proteins [BR:
cob03400
]
COB47_1619
Enzymes [BR:
cob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
COB47_1619
DNA replication proteins [BR:
cob03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
COB47_1619
DNA repair and recombination proteins [BR:
cob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
COB47_1619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
Rv2179c-like
RNase_H_2
DEDDh_C
HHH_3
DUF655
T2SSK
DNA_pol_A_exo1
GPI
tRNA_anti-codon
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
ADL42902
UniProt:
D9TFD2
LinkDB
All DBs
Position
complement(1722893..1727101)
Genome browser
AA seq
1402 aa
AA seq
DB search
MSEALFLPVKPVKIEFDKSSMDLKVYVESLDNLKDIDLIEIEQRFKSLLESCRDVEIKLF
KSRNLALDELLKKYRWFLFYKISKKCNGLSHFLRECEIVQSSSGLDFLVPNGIRDILFER
KVDVLVKQILSEEFGIVCDVDFKIKDFFIQFDTNQEVEKYLRLSEEKEEETEKITIEKSE
VETDPTIIFGKKIDEKKEVTPISFVKVGTDCVIEGEIFNLEIKETKNKNVLVYKLYITDY
LNSTFVKIVAKKDKIPTSISIGDYVKVEGRVEFDDFEKAVVVNAKNINKSQKPQRLDTSD
NKRVELHAHTKMSAMDAVCSAEEIIKLAASMGHKAVAITDHGVVQAFPEAQEASKSYNIK
VIYGMECYLIDDGAPVVYNPKEGQGFDSTFVVVDIETTGFDSQRDRIIEIGAVKIENGQI
TERFSTFVDPEGKIPVRISELTGIYQDMVDKAPKLSDAILEFERFASGSVLVAHNAQFDI
GFLKKAYQECGIIFDYTYIDTLELSRRLLTDLSSHKLNKVAEFLNVELKHHHRADSDAET
TANIFISLVERLKARGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY
SHLEYFYKRPRIPKSLLIQLRDGLLIGSACESGEIFRAFLEGKSEEEIEKIAAFYDFLEI
MPVENNSFLIREGYLKDEESLREINKKIYQLGKKLGKLVVATSDAHYCHPHQRVLRQILK
HNQGYDDVENDPQLYFRTTDEMLKEFEYLGRDACYEVVVENTNKIADMIEDVKPIPDETF
PPKIEGAEEEIYNMTMKKAHEIYGDPLPEIVRARLEKELNSIIKNGFAVMYLIAQKLVSK
SLSDGYLVGSRGSVGSSLVATMCGITEVNPLPPHYVCPNCKYSEFITDGSVGCGYDLEDK
NCPRCGEKLRKDGHDIPFETFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRA
GTISTVAEKTAHGFVTKYAEEKGLSLHPAEILRLSQGCTGVKRTTGQHPGGLMIVPRDRE
IFDFTPIQHPADSEDKSVITTHFDYHAISGRLLKLDILGHDDPTVIRMLQDLTGVDPRSI
PLDDKDTMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFVRQMLIETKPKTFAELVRIS
GLSHGTNVWTNNAQDLVRNGIATLKEVISTRDDIMLYLIQKGVPPKDSFRIMEDVRKGKG
LKPEDEQLLRAHNVPDWYIESCKKITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYF
TVRADDFDYATILKGRDAIRQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPV
DLNESDAERFIIKDGGLLIPFNALPNVGVAAAKSIVEARKEGRFLSVDDLQRRAKLNKQV
IEILTQYKVLKDLPQTSQLSFF
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggctctatttttgccagtaaaacctgtcaagattgagtttgacaaatcaagt
atggatcttaaggtttatgttgagagccttgataacctgaaagatattgacctcattgaa
attgagcaaagattcaagtctcttttagaaagttgcagggatgttgagataaaacttttc
aaaagcagaaacctggcgttggacgaacttttgaaaaaatataggtggtttttgttttat
aaaatttcaaaaaaatgtaacggtcttagccattttttgagagaatgcgagattgtgcaa
agttcaagcggcttagattttttggttccaaatggtatcagagatattctttttgaaaga
aaagtagatgtgcttgtaaagcaaatactgtctgaagagtttggaatagtatgcgacgtg
gattttaagattaaagacttttttatccagtttgatacaaaccaagaagtagaaaaatat
ctcagacttagcgaggaaaaggaagaagaaactgaaaaaattacaattgaaaaaagtgag
gttgagacagacccaaccattatatttggcaaaaagatagatgaaaagaaagaagtaact
cctatttcttttgtcaaagttggcactgattgcgtgatcgaaggtgaaatttttaatctt
gagataaaagagactaaaaacaagaatgtgctcgtatacaagctttacatcacggactat
ttaaattcaacctttgtaaaaattgttgctaagaaagataaaattcctacttcaatttct
attggagattatgttaaggttgaaggcagagtggaatttgacgattttgaaaaagcggtt
gtggtgaatgctaaaaacataaacaaaagtcaaaaacctcagcgacttgatacaagcgat
aacaagagagtagaacttcatgctcacaccaaaatgtctgctatggatgctgtgtgctct
gcagaggagattataaaattggcagcttcaatgggacacaaagcagttgcaataacagac
catggagttgttcaggcgtttccggaagcacaggaagcaagcaaaagctataatatcaaa
gtcatctatgggatggagtgctatcttattgatgatggcgcgccagttgtttacaatcct
aaggaaggacaaggatttgactctacctttgtggttgttgacattgaaacaacagggttt
gacagtcaaagagatagaataatagaaattggtgctgtgaagatagaaaatggtcaaata
acagagagattttctacatttgttgaccccgaaggcaaaatccctgtcaggatatcagag
ctaacaggcatataccaagatatggttgataaagccccaaagctgagtgatgccattttg
gaatttgaaagatttgcaagtggtagtgttcttgttgcgcataacgctcagtttgatatt
ggatttttgaaaaaggcgtatcaggaatgtggaattatattcgactatacatatatagat
acactggagctttcaagaaggcttttgacagatctgtcttctcataagttaaacaaagtt
gcagagtttttaaatgtagagttaaaacaccatcacagagctgattctgatgcagagaca
acagctaatatctttatatcacttgtggaaaggttaaaagcaagaggatacaaatggtta
aaagaacttaattcaattgagtcaaacgcaaaagcagacctcaaatctcacagctatcat
gcaactatacttgtaaagaaccagcaaggcttaaaaaatctttacaaactggtatcatat
tcccatttagaatacttctacaaaagaccaaggatacctaagagtcttttaatacaattg
agagatggacttctgataggaagcgcatgtgagtctggtgaaattttcagggcatttttg
gaagggaaaagtgaggaagagatagagaagatagcagcattttatgattttcttgagata
atgccggttgagaataattcttttttaattagagaaggatacttaaaagatgaagaaagc
ctaagagagattaataaaaagatttatcagcttggcaagaaacttggcaagcttgttgtt
gcaacatctgatgcgcactattgtcatccacaccagagagtgttgcgccagattttaaaa
cataaccaagggtacgatgatgttgaaaatgatccgcagctttatttcaggacaacagat
gagatgctcaaagaatttgaatatctgggcagagatgcttgttatgaagttgttgtagaa
aataccaataagattgccgatatgatagaagatgtaaaaccaatacccgatgagactttc
ccacccaagattgagggcgctgaggaagaaatatacaacatgacaatgaagaaagctcac
gaaatatatggagaccctcttccggaaattgtaagagcacggcttgaaaaggaactgaat
tcgataatcaagaatggttttgcagtgatgtatttgattgcccaaaaacttgtatctaaa
tctttgtcagacggttatcttgttggttcgcgagggtctgttggttcttctcttgttgca
acaatgtgtgggataacagaagtaaatcctctgcctccgcattatgtttgtccaaattgc
aaatattctgagtttataacagatggttctgttggatgtggttatgatttagaagacaaa
aactgtccacgctgtggagaaaaacttagaaaagatgggcatgatataccgtttgagacc
ttcttaggatttgatggtgataaagaaccagatattgaccttaacttttctggtgattac
cagccaattgcacacaagtttacagaggagctgtttggacaaggctatgttttcagagca
ggtacaatctcaacagttgctgaaaagactgcgcacgggtttgtaacaaaatatgctgag
gaaaagggtttgagtcttcatccagcagagattttgagactttctcaaggttgcacaggg
gtaaaaagaacaacaggccagcatcccggcgggcttatgattgttccaagagacagagag
atatttgattttacaccaatccagcatccagcagatagcgaggacaaaagtgttatcaca
acgcattttgattaccatgctatctcaggaaggcttttgaaacttgatattcttggacac
gacgacccgactgtcatacgaatgcttcaggacttgacgggagttgacccgcgttcaatt
cctcttgatgacaaagatacgatgtcaatttttacaagcacagaagctcttggaatttct
cctgaggacatagattgtgaagtagggacttttggtatacctgagtttgggacaaggttt
gtaagacagatgttaattgagacaaagccaaagacgtttgctgaacttgtgcgaatttcg
ggactttcgcacggcacaaatgtgtggacaaataatgctcaggatttagtaagaaatgga
attgcaacgctcaaagaggtaatttctacaagagacgatattatgttatatttaattcaa
aagggtgttccaccaaaagacagtttcagaatcatggaagatgttagaaaaggtaaagga
ttaaagccggaggatgagcaacttctaagagctcacaatgttccagactggtatatagag
agctgtaaaaagataacgtacatgtttccaaaagcacatgctgcagcgtatgtaatgatg
gctttcaggattgcttatttcaaggtgcattataaggaggctttctatgcaacatatttt
acagtcagagcagacgactttgattatgcaacaatcctcaagggaagagatgctataaga
cagaaaataagagatttggaaaacaggataagtagcctttctcagaaagacaaaaacctt
ctgacagtgcttgagattgcaaatgagatgttagcacgaggtttaaagttttaccctgtt
gatttgaatgagtctgatgcagagagattcatcataaaagatggagggcttttaataccc
tttaatgctctgccaaatgttggggtggcagctgcaaaaagcattgtggaggcgcgaaaa
gaaggaaggtttttgtctgtggatgaccttcaaagaagagcaaagctaaacaagcaggtt
atagagattttgactcagtataaagtgttaaaagacttgcctcaaacaagtcagctgagc
tttttctaa
DBGET
integrated database retrieval system
