Caldicellulosiruptor obsidiansis: COB47_1885
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Entry
COB47_1885 CDS
T01293
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cob
Caldicellulosiruptor obsidiansis
Pathway
cob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COB47_1885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cob03019
]
COB47_1885
03016 Transfer RNA biogenesis [BR:
cob03016
]
COB47_1885
Enzymes [BR:
cob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
COB47_1885
Messenger RNA biogenesis [BR:
cob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
COB47_1885
Transfer RNA biogenesis [BR:
cob03016
]
Prokaryotic type
tRNA degradation factors
COB47_1885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1_RRP5
OB_Dis3
WHD_TBPIP
Rho_RNA_bind
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADL43154
UniProt:
D9TG34
LinkDB
All DBs
Position
complement(2040655..2042853)
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AA seq
732 aa
AA seq
DB search
MNLVYEIKRVKGCDTSVKKARIEEKKQEVLALFQEESYHPMTFSEIVEVLNWDEKGEKTL
KRILDELEQEGKIVKTKRGRFGLAEEMNLFAGTLEVNPRGYGFLIPDNPNIPDIYVSAEN
MNGAMHGDRVLVKALSAVPVEGKKIEGYVERILQRGITKVVGRYEDSRNFGFVIPDDQRI
IYDIYIPKSGKNKAKTGQKVVVEITRYPEKRRNPEGKIVEILGYENAKGVDILSIIKKYE
LDEEFPKEVLKEIENIPDEVTQEDLEGRVDLRNWTIFTIDGEDAKDFDDAVSIKKLPNGN
YLLGVHIADVSHYVKPNTHLDKEAYRRGTSVYLVDRVIPMLPFKLSNGICSLNPNVDRLT
FSVLMEIDKQGNVVKHDIFESVIRSKERMTYTNVTKILKEEDKELLKRYEHIREDLELMR
ELALILREKRMKRGALDFDFDETKVILDKNGKPIDVIRYELTISNKIIEEFMLICNETVA
NHFYWLNVPFLYRVHEEPDIEKIYQFAEFIYNMGYVLKGISNKVHPKALQAVLEQSRGTP
EERVIHTLCLRSLKKARYCEENLGHFGLSTEYYCHFTSPIRRYPDLVIHRIMKDVLKGKM
TEKKAQRLKLKMPEIAKWTSQRERVAEEAERETVDLKKVEFMQDKIGQVFEGIISNVTPF
GFFVELENTIEGLVRVSSLEDDYYVFNEKTYQLIGEKSKKVYKIGDRVKVMLIDANVPLR
QIEFAVVEKLKM
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgaacttggtttatgagattaaaagagtaaaaggatgtgatacttctgtgaaaaaggca
aggattgaagagaaaaaacaagaggttttagctctgtttcaagaagaaagttatcatccc
atgacgttttcagagatagtggaagtattaaattgggacgaaaagggtgaaaaaactctc
aaaagaatattagatgaacttgaacaggagggcaaaattgtaaagacaaaacgaggtaga
tttggtcttgctgaagagatgaatctctttgcaggcactcttgaggtaaatccgcggggc
tatggttttttgataccggataatcccaatattcctgatatatatgtttcggctgagaat
atgaatggtgctatgcatggcgacagggtacttgtcaaagcgctttctgctgttcctgtt
gaaggtaagaaaattgagggatatgttgaaagaatattgcaacgaggtattacaaaagtt
gttggaagatatgaggatagcagaaattttggatttgtaattccggacgaccagaggata
atttatgatatatatattcctaaaagtggaaaaaacaaagcaaagacaggacaaaaggtt
gttgttgaaattacaagatatcctgaaaaaagaagaaatccagagggaaaaattgttgaa
attttaggatatgagaatgctaaaggcgttgatattctttcaataatcaaaaaatatgag
cttgatgaagagtttccaaaagaagttttaaaagaaattgagaatattccagacgaggtt
acacaagaggatttagaaggaagagttgacctgcgcaactggacaatctttacaatcgat
ggtgaggatgcaaaagactttgacgatgcagtgtctatcaaaaaacttccaaacgggaac
tatcttttaggtgttcatattgcagatgttagccactatgtaaagccaaacacccatctt
gacaaggaagcttacaggcgcggaacgtctgtgtatcttgttgacagagtcatcccaatg
cttccgtttaagctttcaaatggcatctgttcactcaacccaaacgttgacaggttgaca
ttttctgttcttatggagattgacaagcagggaaatgttgtgaagcatgacatctttgaa
agtgtgatcagaagcaaagagagaatgacgtatacaaatgtgacaaagattctcaaagaa
gaggacaaagagcttttgaaaaggtatgaacatataagagaagacttagagctaatgcgc
gagcttgctttaattttgcgagaaaagagaatgaaaagaggagctttggactttgatttt
gacgagacaaaagtcatacttgacaaaaacggcaaacccatagacgttatccgatatgag
cttacaatctctaataaaataattgaagagtttatgctaatttgcaacgagacagttgca
aatcatttctactggctaaatgttccgtttttgtacagggttcatgaagagcctgatatt
gaaaagatttaccagtttgcagaatttatatacaacatggggtatgttctaaaaggtatt
tcgaacaaggtacatcccaaagctttgcaggcggttttagagcaaagccgtggcacgcca
gaagaaagggttattcatacgctgtgtttgaggtctcttaagaaagcaaggtactgtgaa
gaaaaccttggtcactttggtctttcgacagaatactattgtcattttacctctccaata
agaaggtatcctgaccttgtaatccacaggattatgaaagatgttttgaaaggcaaaatg
acagagaagaaagctcagagactgaaacttaaaatgccagagattgcaaaatggacatca
cagagagaaagagttgcagaagaggcagaacgtgagacggttgatcttaagaaagtagag
tttatgcaggataaaattggtcaggtattcgaaggtattatttcaaacgttacacctttt
ggattttttgttgagcttgagaatacaattgaaggcttagtaagagtcagctcattagag
gatgattattatgtcttcaatgaaaagacttatcagcttataggcgaaaagtcaaaaaag
gtgtataagataggtgacagggtaaaagtaatgctcattgacgctaatgtgccgctaaga
caaatagagtttgctgttgtggaaaaactcaaaatgtag
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