Caldicellulosiruptor obsidiansis: COB47_1925
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Entry
COB47_1925 CDS
T01293
Name
(GenBank) RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily
KO
K02405
RNA polymerase sigma factor FliA
Organism
cob
Caldicellulosiruptor obsidiansis
Pathway
cob02020
Two-component system
cob02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cob00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
COB47_1925
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
COB47_1925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cob03021
]
COB47_1925
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
cob02035
]
COB47_1925
Transcription machinery [BR:
cob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
COB47_1925
Bacterial motility proteins [BR:
cob02035
]
Flagellar system
Flagellar assembly proteins
Stator
COB47_1925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_23
HTH_24
HTH_17
HTH_3
HTH_AsnC-type
HTH_28
HTH_29
HTH_38
UPF0122
PCI
HTH_37
HTH_10
HTH_Tnp_ISL3
Rv2175c_wHTH
PhyR_sigma-like
HTH_5
DUF134
Sigma70_ECF
DUF1798
HTH_6
Phage_terminase
TFCD_C
HTH_50
MarR_2
TnsD
HTH_11
GerE
MarR
KORA
Motif
Other DBs
NCBI-ProteinID:
ADL43193
UniProt:
D9TG73
LinkDB
All DBs
Position
complement(2081810..2082550)
Genome browser
AA seq
246 aa
AA seq
DB search
MDEALLWEKFIKTKDPKIKEQLIIKYMPLVKLVAGRMAIYFGGNVEYDDLVSYGSIGLLD
AIEKFDSQKGVKFETYAYTRIKGAIIDCVRSQDFLPRSIRQKAKEIEKAYIEIEREGRTP
TDDEVAKRVGLSISELQKLQEKISSGMIVSLDSFLEQNYESKIGGLEDFVSQPEHFIENE
ELKEVLRQQIDNLLENERMVIVLYYYEELSIKEIAKILGVSESRVSQLHTRALLKLRSAL
QKYLEK
NT seq
741 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagcacttttgtgggaaaagtttataaagaccaaagacccgaaaataaaagaa
cagctcataataaagtacatgccgcttgtgaagcttgtggctggcagaatggccatatat
tttggcggaaacgttgagtatgatgacttggtaagttatggttcaattggtcttcttgat
gcaattgaaaaatttgacagtcaaaaaggagtcaagtttgagacatatgcatatacaaga
ataaaaggagcaataattgactgtgttagaagccaggattttttgccacgaagtatccga
caaaaggcaaaggagatagagaaggcatacattgagatagaaagagaaggcaggactccg
acagatgatgaagtggcaaaaagagttggactttcaataagtgaactacaaaagcttcaa
gaaaagatatcaagtggtatgattgtttcattggatagttttttggagcagaactatgaa
agcaaaattggaggacttgaagattttgtatctcagccggagcattttatagagaatgag
gagctcaaagaggtattaagacagcagatagacaatcttttggagaacgaaaggatggtg
attgtgctctattattatgaggaacttagcataaaagagatagcaaaaattttaggcgta
tctgaatcacgtgtaagtcagcttcacacgcgagcacttttaaaactcaggagtgcttta
caaaagtatttggaaaaataa
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