Caldicellulosiruptor obsidiansis: COB47_1962
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Entry
COB47_1962 CDS
T01293
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cob
Caldicellulosiruptor obsidiansis
Brite
KEGG Orthology (KO) [BR:
cob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cob03032
]
COB47_1962
03400 DNA repair and recombination proteins [BR:
cob03400
]
COB47_1962
Enzymes [BR:
cob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
COB47_1962
DNA replication proteins [BR:
cob03032
]
Prokaryotic type
DNA Topoisomerases
COB47_1962
DNA repair and recombination proteins [BR:
cob03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
COB47_1962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Zn_Ribbon_TF
HypA
Toprim_4
HVO_2753_ZBP
Zn_ribbon_RPB9
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ADL43229
UniProt:
D9TGA9
LinkDB
All DBs
Position
complement(2113489..2115570)
Genome browser
AA seq
693 aa
AA seq
DB search
MKKLVIVESPAKAKTIAKYLGKEFKVEASMGHVRDLPKSDLGVDIENGFVPKYINIRGKA
DVINRLKKSAEAAEKVYLATDPDREGEAISWHLATILGLDVNDNVRITFNEITKKAVQES
LKNARPIDQNLVNAQQARRVLDRLVGYKLSPFLWEKVKGGLSAGRVQSVATKLVVEKEEE
IENFKPEEYWTLEAVFKKDAQEFKAKFYGDKKGKIELKNQGQIQEIEEKIKNKEFKVVKL
KVSEKKKNPPPPFITSTLQQEASRKLRFTPAKTMAVAQMLYEGVEIKGEGSVGLITYMRT
DSTRISEEAQQAARKLIAQKFGREYLPEKPRVYKTKKDAQDAHEAIRPTYLEMNPESIKD
SLTPEQYKLYKLIYDRFLASQMESSIYDVLSAELEVEGYVFRLTGSKLKFAGFMEVYVEG
KDTEDEEEENQLPEISEGEVLKPIKLESKQHFTQPPSRYTEATLIKALEEKGIGRPSTYA
PTIQTILERGYVVKEDRFLKPTELGKLVTNILKEYFKDIIDIEFTAELESNLDKIEEGKI
EWTEVVRKYYQPLEKELEIARATLLKVKVEDEETDIVCENCGRKMVIKKGRYGKFLACPG
YPECKNTKPYYDYLDVLCPKCGKKVIEKKSKKGKRYYTCEGYPDCDLILWEKPAKNCPKC
GSLMFEKGRKGNKKLVCSNENCLYEEKMGEKGE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaagcttgtcattgttgagtcacctgcaaaagctaaaacaattgcaaagtatctt
ggcaaggaattcaaggtagaggcttcaatgggacatgtcagagaccttccaaagagcgat
ttgggggttgacatagagaatggttttgtgcctaagtatatcaacatcagaggtaaggcg
gatgtaataaacaggctcaaaaaatctgctgaggctgcagaaaaggtctaccttgcgaca
gaccccgacagggaaggtgaggcaatttcatggcatttggctactattttgggacttgat
gtaaatgacaatgtgaggattacattcaatgagataaccaaaaaagctgttcaggaatct
ttgaaaaatgcaaggccaattgaccagaaccttgtcaatgcccagcaggcacgaagagtt
ttagacaggcttgttggatataagctcagtccgtttttgtgggaaaaagtcaaaggtgga
ctttcagcaggaagagtgcagtctgttgcgacaaagcttgtggttgaaaaagaagaggag
atagaaaattttaagcctgaagagtactggacgttagaagcggtatttaaaaaagatgcc
caagaatttaaagcaaagttttatggggataagaaggggaagattgagcttaaaaaccag
ggtcagatccaagagattgaagaaaagataaaaaataaggagttcaaggttgtaaagcta
aaggtttcagaaaagaagaaaaatccgccaccaccatttatcacgagcacccttcaacag
gaagcgtcaagaaagttaaggtttactcctgcaaagacaatggcagttgctcagatgcta
tatgaaggtgttgagataaaaggagagggaagcgtcggtcttataacatatatgagaaca
gattctacaagaatttctgaggaggcacagcaggcagcacgaaaactcatagcacagaag
ttcggtagagaatatcttcccgaaaagccgagggtttacaaaacaaaaaaagatgcgcag
gatgctcacgaggctataagacccacctacttagagatgaaccctgagagtataaaagat
tctttgacacctgagcagtacaagctgtacaaactcatttatgacaggtttttagcgtcg
cagatggaaagcagtatatatgatgttctttcagccgagcttgaagtggaaggctatgtt
ttcaggctcacagggtcaaagctcaagtttgcagggttcatggaagtgtacgtcgagggt
aaagacacagaggatgaagaagaggaaaatcagcttccagaaattagtgaaggagaggtt
ttaaagcccataaaacttgagagcaaacagcattttactcaaccgccttctcgctatact
gaagcaaccttaataaaggctttagaagaaaagggcataggaagaccgagcacgtacgct
ccaacaatccagacaattctggagagaggatatgttgtcaaagaagataggtttttaaaa
ccaacagagcttggcaaacttgtaacaaatatacttaaagaatatttcaaagacataata
gacattgaatttactgcagagctggagagcaaccttgacaagattgaggaaggaaagatt
gagtggactgaagttgtaagaaaatactaccagccgcttgaaaaggaacttgagatagca
cgagctactttgctaaaggttaaggttgaggatgaggagacagacattgtatgcgaaaac
tgtggaagaaaaatggtgataaaaaaaggcagatatggaaaattcttggcatgtccagga
tatcctgaatgcaaaaacacaaaaccctattacgattaccttgatgtgttgtgtccaaag
tgtggcaaaaaggtaatagaaaagaagtccaaaaaaggcaaaagatattacacgtgcgaa
ggatatcctgactgtgacctcattttgtgggaaaagccagccaaaaactgtccaaagtgc
ggcagtctcatgtttgaaaagggcaggaaagggaataaaaagcttgtatgttcaaatgaa
aactgcctgtatgaagaaaaaatgggagaaaaaggtgagtag
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