Cobetia sp. 4B: H2O77_02340
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Entry
H2O77_02340 CDS
T09692
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cobb
Cobetia sp. 4B
Pathway
cobb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H2O77_02340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobb03019
]
H2O77_02340
03009 Ribosome biogenesis [BR:
cobb03009
]
H2O77_02340
Enzymes [BR:
cobb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H2O77_02340
Messenger RNA biogenesis [BR:
cobb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H2O77_02340
Ribosome biogenesis [BR:
cobb03009
]
Prokaryotic type
rRNA helicases
H2O77_02340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QWN37370
LinkDB
All DBs
Position
534265..535971
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AA seq
568 aa
AA seq
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MTTTSVVDRFSDLALLPAVLTSLEKLGYETPSPIQAQTIPSLLEGRDMIGQAQTGTGKTA
AFALPLLTRLDLDRREPQVLVLAPTRELAQQVAVNFTRYGQFMRGLEVATLCGGQDYREQ
MRSLKSGAQIVVGTPGRVIDHLDRKSLNLNGLKALVLDEADEMLRMGFIDDVKRVVADTP
KEAQRVFFSATLPTEIERIVNRYLVDPVKVAIKSESRTASTIEQMMVRVEGGAKLEALSR
LLEVETVDAAIVFVRTRAACTTVVEQLIARGISAAALSGDLDQSLRERTVTRLKRGKVDV
LVATDVAARGLDVARITHVFNYDLPGDSESFVHRTGRTGRAGREGRAITFVSGREMRKVR
WMEQALGQRITERQLPSEEEIRGHRDAAFRARVVEALGSSSNGHRALVQSLVEEGHDPVE
LAAVFVKMARAEETPIQSLPKPGARRNERSERGERTERPERGERRNSAPVAREGMKLYRV
AVGHRDGVKPGQLVGALANEGGIEGSRIGRIDIRNTHSVVELPSGLPTSIVSKMARARVA
GRPLELAEDGAGARPQRREGGNDDRRRA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgacttccgtcgtcgatcgcttcagcgatcttgccctgctgcctgccgtcctg
acctctctcgagaagctgggctacgaaactccgtccccgattcaggctcagaccatcccg
agtctgctcgaaggccgtgacatgatcggccaggcacagacgggtaccggcaagaccgct
gcctttgcactcccgctgttgacccgtctggacctcgaccgccgtgaaccgcaggttctc
gtgctggccccgacccgtgagctggcccaacaggtcgccgtcaacttcacacgttacggt
cagttcatgcgtggcctggaagtggccactctctgcggtggtcaggactaccgcgagcag
atgcgtagcctcaagagcggcgcgcagatcgtcgtcggcaccccgggtcgtgtcatcgat
cacctggaccgcaagagcctgaacctgaacggcctgaaagccctcgtgctggatgaagcc
gatgagatgctgcgcatgggcttcatcgatgacgtcaagcgcgtcgtcgccgataccccg
aaggaagcgcagcgcgtcttcttctccgcgacgctgccgaccgagatcgagcgtatcgtc
aaccgctacctggttgatccggtcaaggttgccatcaagtccgaatcgcgtaccgcttcc
accatcgaacagatgatggtgcgtgtcgaaggcggcgccaagctcgaagcgctgtcccgt
ctgctggaagtcgagaccgtcgatgcggccatcgtcttcgtgcgtactcgtgccgcctgt
accactgtcgtcgaacagctgatcgctcgcggtatctccgcggcagcgctgtccggtgat
ctggaccagtccctgcgcgagcgcaccgtgactcgcctgaagcgtggcaaggtcgacgtg
ctggtcgcgaccgacgtcgccgctcgtggtctggacgtggcgcgtatcacccacgtcttc
aactacgacctgccgggtgacagcgaatccttcgtccaccgtactggccgtactggccgt
gccggtcgtgaaggtcgcgccatcaccttcgtcagcggtcgcgaaatgcgcaaggttcgc
tggatggagcaggccctgggccagcgcatcaccgaacgccagctgccgagcgaagaagag
atccgtggccaccgtgacgccgccttccgtgctcgcgtcgtcgaagccctgggcagcagc
tccaacggtcaccgcgctctggtccagagcctggtcgaagaaggtcacgacccggtcgag
ctggccgctgtcttcgtcaagatggctcgcgccgaagagacgccgatccagtctctgccg
aagccgggtgcgcgtcgcaacgagcgttccgagcgcggtgagcgcaccgagcgtccggaa
cgcggtgagcgtcgcaactccgcgccggtcgcacgtgaaggcatgaagctctaccgtgtg
gccgtcggccaccgtgacggcgtcaagccgggccagctggttggcgctctcgccaacgaa
ggcggcatcgaaggttcacgcatcggtcgcatcgacatccgcaacacgcacagtgtcgtg
gaactgccgagcggtctgccgaccagcatcgtgtccaagatggcgcgtgctcgcgtcgct
ggccgcccgctggaactggcagaagacggtgcgggcgctcgtccgcagcgccgtgaaggt
ggcaacgacgaccgtcgtcgcgcctga
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