Cobetia sp. 4B: H2O77_02595
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Entry
H2O77_02595 CDS
T09692
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cobb
Cobetia sp. 4B
Brite
KEGG Orthology (KO) [BR:
cobb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cobb03016
]
H2O77_02595
Enzymes [BR:
cobb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H2O77_02595
Transfer RNA biogenesis [BR:
cobb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
H2O77_02595
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Arm-DNA-bind_3
PilZ
Motif
Other DBs
NCBI-ProteinID:
QWN37414
LinkDB
All DBs
Position
complement(606482..608428)
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AA seq
648 aa
AA seq
DB search
MLQNNSLLAQLKDQIRQEIPRVTGVIKGTDKGFGFLECEDGESFFVPPPAMKQVLHGDTV
EATVKVEGEKKSVQPEVLIETGVDRFVARVGKRDGRLNVMPDHPSINTRMKARVKRGINE
EALNDGDWVVARLLRHPMRKDDRSFFAQIEEVIATVDNPRVPWRVTLARHALEQASPEGG
TDWPLLEEGLTREDMTHVPFFTIDGEKTRDMDDALHIVERPEGGWTLSIAIADPTAYVPE
GSRVDEEARTRSFTVYLPSQNVTMLPEILADDLCSLKEGEDRPTLMCIVDIDTDGVIGEP
KFFAATMRSHHRLTYDNVSDWIEGQEGSWKPETEELAEGLRQLEAFTQARIAWRARNSQV
FRERPDFEFELDEEGNVLNVRADHRRISNRMIEESMITANLSCARLLSKHIGHGIFNVHQ
GFAPEKYDDTIEFLAGQNITATPEQLGSLEGYRLIRQELDSREDTWLDVRMRRFQGYTVM
SAQPGPHFGLGLEAYATWTSPIRKYGDMVNHRLIKRVILGQDVPAEATEQLTEHLSERRR
LNRMAERDVKDWLYVRYLTKAAEEQQVFTGEIIDIRRGGMRVRLEENGASVFIPAPLIHS
DRKKVAIDDKEGRVRIEDELRYSLGDIIKVSLTEAREERRSLVGRPAE
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagaacaattcgctgctggcgcagctgaaagatcaaatccgccaggaaattccc
cgtgtcacgggggtgatcaaaggcaccgacaagggcttcggcttcctcgaatgcgaggac
ggcgagtctttcttcgtgccgccacccgccatgaagcaggtactgcacggcgataccgtc
gaagcaaccgtcaaggtggaaggtgagaagaagtccgtacagccggaagtgctgattgag
acgggtgtcgatcgcttcgtcgctcgtgtcggcaagcgtgatggccgcctgaacgtgatg
ccggatcatccctccatcaacacgcgcatgaaagcgcgcgtgaagcgtggcatcaatgag
gaagccctcaatgatggcgactgggtcgtggcacgtctgctgcgtcacccgatgcgcaag
gacgaccgcagcttcttcgcccagatcgaggaagtcatcgccaccgtggacaacccgcgt
gtgccgtggcgcgtcaccctggcgcgtcacgcgctggaacaggcctctccggagggcggc
actgactggccgctgctcgaggaaggcctgactcgcgaagacatgacccacgtgcccttc
ttcaccatcgatggtgagaagacgcgtgacatggatgacgccctgcacatcgtcgagcgc
ccggaaggcggctggaccctgagcatcgccatcgcggacccgaccgcctacgtgccggaa
ggcagccgtgtcgacgaagaggcgcgcacgcgctccttcaccgtctacctgccgagccag
aacgtcaccatgctgccggaaatcctggccgacgacctgtgctcgctgaaggaaggtgaa
gaccgtccgacgctgatgtgcatcgtcgacatcgataccgatggcgtgatcggcgagccg
aagttcttcgcggccaccatgcgctcccaccaccgcctgacctacgacaacgtctccgac
tggatcgaaggccaggaaggcagctggaagccggaaaccgaagagctggccgaaggtctg
cgtcagctggaagccttcacccaggcgcgtatcgcctggcgtgcacgcaattcccaggtc
ttccgcgagcgtccggacttcgagttcgagctggatgaggaaggcaacgtgctcaacgta
cgtgccgaccaccgccgcatcagcaatcgcatgatcgaagaatccatgatcaccgcgaac
ctgagctgcgcacgcctgctctccaagcacatcggtcacggtatcttcaacgtgcaccag
ggcttcgcgccggagaagtacgacgacaccatcgagttcctggctggtcagaacatcacc
gccacgccggaacagctgggcagcctggaaggctaccgcctgatccgtcaggagctggat
agccgcgaagacacctggctggacgtgcgcatgcgtcgcttccagggttacaccgtgatg
tccgctcagccggggccgcacttcggtctgggtctggaagcctacgcgacctggacctcg
ccgatccgcaagtacggcgacatggtcaaccaccgcttgatcaagcgcgtgattctcggc
caggacgtgccggcggaagccaccgagcagctgaccgagcacctcagcgaacgtcgtcgt
ctcaaccgcatggccgagcgcgatgtgaaggactggctctacgtgcgctacctgaccaag
gccgccgaagaacagcaggtcttcactggcgagatcatcgacatccgtcgtggcggcatg
cgcgtgcgtctggaagagaatggcgccagcgtcttcattccggcaccgctgatccacagc
gatcgcaagaaggtcgcgatcgatgacaaggaaggccgcgtgcgcatcgaagacgagctg
cgttactcactgggcgacatcatcaaggtctccttgaccgaagcccgtgaagagcgtcgt
tcactggtaggtcgtccggccgaataa
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