Cobetia sp. 4B: H2O77_02695
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Entry
H2O77_02695 CDS
T09692
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cobb
Cobetia sp. 4B
Brite
KEGG Orthology (KO) [BR:
cobb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobb03019
]
H2O77_02695 (hrpA)
Enzymes [BR:
cobb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H2O77_02695 (hrpA)
Messenger RNA biogenesis [BR:
cobb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H2O77_02695 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
SLFN-g3_helicase
AAA_25
T2SSE
NACHT
Motif
Other DBs
NCBI-ProteinID:
QWN37430
LinkDB
All DBs
Position
637408..641574
Genome browser
AA seq
1388 aa
AA seq
DB search
MSDTATAPSEHARLEALAARLERALSRDQRELGKRLAGLRRRLKEGKPVDRAINDIESRL
EASIAQRAARETALARWQTPAALNYPPELPVVERREDILAALAEHQIVVVAGETGSGKTT
QLPKLCLEMGLGRNGLIGHTQPRRLAARSVAARLAEELETTLGETVGYQVRFNDTTGPST
LIKLMTDGILLAETQHDPDLSRYEAIIIDEAHERSLNIDFLLGYLKRLTARRPDLKIIIT
SATIDVERFSQHFAAQDGTPAPIVSVSGRNFPVETQYLPLVRDAEDEEDLSLQEGILRAV
EELSVIEREKGWMQGPRDVLIFLPGEREIRATADTLRRAQLRDTEVLPLYARLSNEEQNR
VFQPHRGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRSKIQRLPVEPISQASAN
QRKGRCGRIAEGLCIRLYSEEDFLARPEYTEPEIQRTNLASVILSMLSLKLGDIEKFPFV
DAPDSRFVTDGFRLLRELGAVDEHNRLSRDGRTLARLPIDPRLARMVLEGASRGCLREVL
IIVSALSIQDPRERPADKRQQADQIHHEWDDDNSDFVSWLNLWEGFELARDALGANPLRR
WCKARFLNYLRLREWHDTFRQLKQLTRDLGLEMTSAQHERDAEAQAEVTARVLASPGQGR
RPSVAIDHESLHRALLTGLLSNLGLKQENREYLGARNRRFFVHPGSGVAKKSPKWVMAAE
MVETTKLYARQVAAIKPEWVEPLAEHLVKRSYSEPHWEMKRAQVVASEQVTLFGLPIVTA
RKVHYGPLAPEESRELFIRRALVEGEFQTRAPFFAHNRGLMDEVGELEDRARKRDILVDE
ETLFAFYAERIPEGIYNGRSFDKWRKEAERDNPDVLHLNLDDLMARDAEEVTVARYPEQL
HHNSVAYPLSYHFAPGAVDDGVTMIVPAAMLSQLPRYRIEWLVPGLLRDKAIALMKSLPK
QYRKQVVPIPNWVDAALEALTPDDVPLTDALAEFMRVKTGLRLPQDAWAPETLEPHLKMN
LRIVDQDGKVLGEGRYLEALEARFKDSAAAAARAMASRSREADSEVLEDLPEAPIATSHS
TTQAGIRVEAYPALVVKAAAPADSGMSAKQRKLARKTGKNSAPSSHAPASATAQVEQNLS
VELFDHPAKAAAAHRDGITRLAMARLPDQVRYLDRDLKALERCALLFAKVGTRRQLADDF
IYSVFEQVMAVEPLPRSRSELQARLDDKRAELVPHAEALLKPLEAALKQHLELSKRLKGK
IDFSMALVVADLKAQQARLITPGFIQASGDWLHQLPRYVEAMLIRLDKAPRERMRDQRDM
EGVKGFESRLDARLSKAREQGLPDAELEEFGWWLQELRVSLFAQQLGTLETVSAKRLEKR
WQELMARR
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgacaccgctaccgcaccgtccgaacatgcgcgtcttgaagccctcgcggctcgc
cttgaacgcgccctgagccgtgatcagcgcgagctgggcaagcgcctggctggcctgcgg
cggcgtctcaaggaaggcaagccggtcgatcgtgccatcaacgacatcgagagccgcctg
gaggcgagcatcgcccagcgcgccgcgcgcgagacggcactggcacgttggcagacaccc
gccgcgctcaactatccgccggaactgccggtggtggagcgtcgcgaagacatcctcgcc
gcgcttgccgagcatcagatcgtggtggtcgccggcgagaccggctcgggcaagaccacc
cagttgcccaagctgtgtctggagatggggctggggcgcaacggcctgatcggccacacc
cagccacgccgtctggcggcgcgctcggtggcggcgcgtctggccgaggagctcgagacg
acactcggcgagacggtcgggtatcaggtgcgcttcaacgacaccaccggcccgtcgacg
ctgatcaagctgatgaccgacggtatcctcctggcggaaacccagcatgatccggacctg
agccgctacgaggcgatcatcatcgatgaggcccacgagcgcagtctgaacatcgacttc
ctgctcggttatctcaagcgtctcaccgcgcgccgtccggacctcaagatcatcatcacc
tcggcgaccatcgacgtggagcgcttcagtcagcacttcgcggcccaggatggcacgccg
gcgcccatcgtctcggtcagcgggcgcaacttcccggtcgagacccagtacctgccgctg
gtgcgcgatgccgaggatgaggaagatctcagcctgcaggaaggtatcctgcgcgcggtg
gaagagctgtcggtgatcgagcgcgagaagggctggatgcagggcccgcgtgacgtgctg
atcttcctgcccggcgagcgtgagatccgcgccaccgcggacactctgcgtcgcgcccag
ctgcgtgataccgaggtactgccgctgtacgcgcgcctctcgaacgaagagcagaaccgc
gtcttccagccgcatcgtggccgccgcatcgtgctggccaccaatgtcgccgagacttcg
ctgaccgtgccgggcatccgctacgtgatcgacccgggcctggtgcgcatcagccgctac
agctatcgctccaagatccagcgtctgccggtggaaccgatcagccaggccagcgccaac
cagcgcaagggccgctgcgggcgtatcgccgaaggcctgtgcatccgcctctacagcgag
gaggacttcctcgcgcgcccggaatacaccgagccggaaatccagcgcaccaacctggcc
tcggtgatcctgtcgatgctgtcgctcaagctgggcgacatcgagaagtttcccttcgtc
gatgcgccggattcgcgcttcgtcaccgatggcttccgcctgctgcgcgaactgggcgcg
gtggatgaacacaaccgcctgagccgtgatggccgcaccctggcgcgtctgcccatcgac
ccgcgtctggcgcgcatggtgcttgagggcgcctcgcgcggctgcctgcgtgaagtgctg
atcatcgtcagcgcgctgtcgatccaggacccgcgcgagcgccccgccgacaagcgccag
caggccgatcagatccaccacgagtgggatgacgacaactccgacttcgtcagctggctg
aatctgtgggaaggcttcgaactggcgcgggatgcgctgggggccaacccgctgcgccgc
tggtgcaaggcgcgtttcctcaactatctgcgcctgcgcgagtggcatgacaccttccgt
cagctcaagcagctgacgcgcgacctggggctggagatgaccagcgcccagcatgagcgc
gacgctgaggcgcaggccgaggtcaccgcgcgggtactggcctcaccggggcagggccgc
cgcccgtcggtggccatcgatcacgaatcactgcatcgcgcgctgttgaccgggctgctc
tccaatcttggcctcaagcaggaaaatcgcgagtatctcggcgcgcgcaaccgacgcttc
ttcgtccacccgggctccggtgtggccaagaagtcgcccaaatgggtgatggcggccgag
atggtcgagaccaccaagctctacgcgcgtcaggtcgcggcgatcaagcccgagtgggtc
gagccgctggccgagcatctggtcaagcgcagctacagcgagccgcactgggagatgaag
cgtgcccaggtggtcgccagtgagcaggtgaccctgttcgggctgcccatcgtcaccgcg
cgcaaggtgcattacggcccgctggcgccggaagaatcccgcgagctgttcattcgccgt
gcgctggtcgagggcgaattccagacccgtgcgccgttcttcgcccacaatcgcggcctg
atggatgaggtcggtgagcttgaggaccgcgcgcgcaagcgggacatcctcgtcgacgaa
gagacgctgttcgccttctatgccgagcgcattccggaaggcatctacaacgggcgcagc
ttcgacaagtggcgcaaggaagccgagcgcgacaacccggatgtcctgcatctgaatctc
gacgacctgatggcgcgcgacgccgaggaagtcaccgtcgcgcgctaccccgaacagctg
caccacaacagcgtcgcctacccgctgagctatcacttcgcgcccggtgcggtggatgac
ggcgtgacgatgatcgtgccggcggcgatgctgtcgcagctgccgcgctatcgcatcgaa
tggctggtgccggggctgttgcgtgacaaggccatcgcgctgatgaagtcgctgcccaag
cagtaccgcaagcaggtagtgccgattcccaactgggtcgatgccgcacttgaggcgctg
accccggacgacgtgccgctgaccgatgcgctggccgagttcatgcgcgtcaagaccggc
ctgcgcctgccgcaggatgcctgggcgcccgaaacgctggaaccgcacctgaagatgaac
ctgcgcatcgtcgatcaggacggcaaggtgctgggcgaagggcgttatctcgaagcgctg
gaggctcgcttcaaggactcggccgcggccgccgcgcgggcgatggccagtcgcagccgt
gaagccgacagcgaagtgctggaagatctgccggaggcgccgatcgccacctcgcacagc
accacccaggcgggcatccgcgtcgaggcctatccggcgctggtggtgaaggcggcagcg
cctgccgacagcggcatgagcgccaagcagcgcaagctggcgcgcaagaccggcaagaac
agcgcgccgtcaagccatgcgcctgccagcgcgacggctcaggtcgagcagaatctgagc
gtggagctgttcgatcacccggccaaggccgccgccgcgcaccgtgatggcatcacgcgt
ctggcgatggcacgcctgccggaccaggtgcgctatctggaccgtgacctcaaggcgctg
gagcgctgtgcgctgctgttcgccaaggtcggcacgcgtcgccaactggcggatgacttc
atctacagcgtcttcgagcaggtgatggccgtcgagccgctgccgcgttcgcgcagcgaa
ctgcaggcgcgtctcgatgacaagcgggccgagctggtgccgcacgccgaggcgctgctc
aagccgctggaagccgcgctcaagcagcatctggagctttccaagcgcctcaagggcaag
atcgacttctcgatggcgctggtggtggctgatctcaaggcccagcaggcgcgcctgatc
acgccgggcttcatccaggcctccggtgactggctgcatcaactgccgcgctatgtggag
gcgatgctgatccgtctcgacaaggcgccgcgtgagcgcatgcgcgaccagcgtgacatg
gaaggggtcaagggcttcgaatcccgccttgatgcccgcctgagcaaggcgcgcgagcag
gggctgccggatgcggagctggaagagttcggctggtggctgcaggaactgcgcgtctcg
ctgtttgcccagcagctcggcaccctggagaccgtctccgccaagcgcctcgagaagcgc
tggcaggagttgatggcgcgccgctga
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