Cobetia sp. 4B: H2O77_03430
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Entry
H2O77_03430 CDS
T09692
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
cobb
Cobetia sp. 4B
Pathway
cobb02020
Two-component system
cobb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cobb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
H2O77_03430
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H2O77_03430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cobb03021
]
H2O77_03430
Transcription machinery [BR:
cobb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H2O77_03430
BRITE hierarchy
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Serglycin
Motif
Other DBs
NCBI-ProteinID:
QWN37550
LinkDB
All DBs
Position
complement(816077..817525)
Genome browser
AA seq
482 aa
AA seq
DB search
MKPTLQLRLGTSLTMTPQLQQAIQLLQLSTLDLRQEIQQALESNPMLELDEDYESLDVVE
TQDSSEISTADSSSEIPEEYPLDSDWSDLYQDHAGSLTSSGSGSGSEEGPDFDRNTSVES
LQDHLRWQLAMTDLDGRESQMAESLIDAVDGAGYLSLSLDELVDGLRGQGLPGLKASELE
QVLLRMQQFDPTGVFARDLRECLLLQLALLPDDLPLLAQARRLVRQFLEALGNDDRKLLK
RRLSLDDDELDHVIRLVRALDPRPASAWGEPASDYVIPDLLVRHTRHGWQVELNPEALPK
LRIQPEYAALIKRADKSADNTFLKDNLQEARWLMKSLSSRNDTLLKVGREIMARQIDFLE
QGEEGMKPLILANIAEVVEMHESTISRVTTQKYIHTPRGVFELKFFFSSQVGGSGSGDAH
SSTAIRARIRKLIAEEPARKPLSDSRLVDLLASDGIEVARRTVAKYREAMGIPSSSERKR
LA
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccaccctgcaactccgcctcggcacctcgctgaccatgacgccgcagctccag
caagcgatccagctgctgcagctgtcgacgctcgacctgcgtcaggagattcagcaagcc
ctcgagtccaaccccatgttggagctcgacgaggactacgagtcgctggatgtcgtcgag
acacaggattcgagcgagatctccactgccgactcctcgagcgagattcccgaggaatac
cccctcgacagtgactggtcggacctctaccaggaccacgccggtagcctgaccagctcc
ggcagtggcagcgggagtgaagaagggccggacttcgatcgcaataccagcgtcgagagc
ctgcaggaccacctgcgctggcagctggcgatgaccgacctcgatggccgtgaaagccag
atggcggagagcctgatcgatgccgtcgacggtgccggctatctgagcctgtctctcgat
gagctggtcgatggcctgcgtggccagggcctgcccggcctcaaggcctccgagctcgag
caggtattgctgcgtatgcagcagttcgacccgaccggcgtcttcgcccgtgacctacgc
gaatgcctgctgctacaactggcgctgctgccggatgatctgccgctgctggcgcaggca
cgccgcctggtacgtcaattcctcgaggcactgggcaacgatgatcgcaagctgctcaag
cgccgcctgagccttgacgatgacgagctggaccacgtcatccgcctggtgcgcgcgctc
gatccgcgtccggcatccgcctggggcgagcccgccagcgattacgtgatccctgatctg
ctggtgcgccatacccgccatggctggcaggtcgagctcaacccggaagcgctgcccaag
ctgcgcatccagccggaatacgccgcgctgatcaagcgtgccgacaagtccgccgacaac
acctttctcaaggacaacctgcaggaagcccgctggctgatgaagagcctgtcatcgcgc
aatgacaccctgctcaaggtcggccgcgagatcatggcgcgccagatcgacttcctcgag
caaggcgaggaaggcatgaagccgctgattctggccaacatcgccgaagtggtcgagatg
cacgaatcgaccatctcgcgggtcactacccagaagtacatccacaccccgcgcggcgtc
ttcgagctcaagttcttcttctcgagccaggtcggtggcagcggcagtggcgacgcccac
tcaagcaccgccattcgtgcccgcatccgcaagctgatcgcggaagagccggcccgcaag
cctctctccgactcacggctggtcgatctgctcgccagcgatggcatcgaggtcgcacgc
cgtaccgtggccaagtatcgcgaagcgatgggcatcccctcctccagcgagcgcaagcgt
ctggcctga
DBGET
integrated database retrieval system