Cobetia sp. 4B: H2O77_06085
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Entry
H2O77_06085 CDS
T09692
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
cobb
Cobetia sp. 4B
Brite
KEGG Orthology (KO) [BR:
cobb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cobb03000
]
H2O77_06085
Transcription factors [BR:
cobb03000
]
Prokaryotic type
Helix-turn-helix
Other families
H2O77_06085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
AAA_2
AAA_3
HTH_30
HTH_7
nSTAND6
AAA_7
HTH_23
HTH_28
HTH_22
HTH_29
HTH_11
HTH_psq
DUF815
Xre-like-HTH
Motif
Other DBs
NCBI-ProteinID:
QWN38020
LinkDB
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Position
complement(1415557..1417452)
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AA seq
631 aa
AA seq
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MTTVASAVAGHILNLLDHWQACLVLTDRDGVVLASYGHQQLLGNDAALLHPGARWREESL
GHNAIAETLNAPRANRLARIALEAHDAECLKGLASASAALLAPASWSASRGLTPGACEGC
LGLICDPYRVRQYSLGMLGVLADDIEQRRLGEAHGHDHHLLRLHLNRSQLDSPSAALLAV
TPQGQVAAASRRGLQLLAAHLELPSAPDNASNSAANASNSAANATDSDSCATRDDIHLLL
GQPLARWQLDWAPLAQLADAQCLTLTQHPRLTGYTLCAAPPRPRVVARAPAERSASQPPT
ETATRETACHPSLARLHHGDAGWARVCELLARLVNARLPLLLQGETGVGKEEVVKALHQA
SHRAHQPLVAINCAALPDELVEAELFGYRRGAFTGADPAGREGRLLEANGGRLFLDEIGD
MPLHVQARLLRVLQEREVTPLGGGKPQRVDFELVAATHQPLSELVNAGRFRADLYYRLCG
ATIALPPLRERHDIAGLSRALLTRLCGEQQRELPRITPAFLDRLTQHDWPGNVRELDNVL
RLALALCDGPTLEPCHVMLAGDCLASQGDCHAAEGEIAHQPSQPSGLPSLHDLSSAEELQ
SALDALGGNVSRLARELGISRTTLYKRLGAA
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggtggcgtcagcggtggccggtcatatcctcaacctgctcgatcactggcag
gcgtgtctggtactgaccgaccgcgacggcgtggtgctggcaagctacggccatcaacag
ctgctgggcaatgacgccgccctgttgcaccccggcgcgcgctggcgtgaggagtcgctg
ggccacaacgccatcgccgagaccctgaatgcaccgcgcgccaatcgcctggcgcgcatc
gcgctcgaagcgcatgacgccgaatgcctcaaggggctggccagtgccagtgccgcgctg
ctggcccccgccagctggagtgccagtcgcggcctgacgcccggcgcctgcgaggggtgc
ctggggctgatctgcgacccctaccgtgtccgccagtacagcctcggcatgctcggggta
ctggcggatgacatcgagcaacgccgactgggcgaagcgcatgggcacgaccatcacctg
ttgcgcctgcatctcaaccgctcgcagctggactcgcccagcgcggccctgctggctgtc
acgccgcaaggtcaggtcgcggctgccagtcgccggggactgcagctgctggcggctcac
cttgaacttccttcagcccctgacaacgcatcgaacagcgcggccaatgcatcgaacagc
gcggccaatgcaacggacagcgacagctgcgccacccgcgatgacatccacctgctgctg
gggcagccgctggcacgctggcagctggactgggcgccgctggcccagctcgccgatgcg
cagtgcctgacgctcacacagcacccgcgcttaacgggctacaccctgtgcgcagccccg
cccaggccacgggtcgtggcccgtgcgccggccgagcgctccgcaagccagccaccgacc
gagaccgccactcgagagactgcgtgccacccgagccttgcgcgcctgcatcatggcgat
gccggctgggccagggtctgcgaactgctggcgcggctggtgaacgcccgcctgccactg
ctgctgcagggcgagaccggcgtcggcaaggaggaagtggtcaaggcgctgcatcaggcc
agtcatcgcgcccatcagccgctggtcgccatcaactgcgccgccttgcctgatgagctg
gtcgaggccgaactgttcggctatcggcgcggcgcctttaccggtgccgaccccgccgga
cgcgaaggccgcctgctcgaggccaatggcgggcgcctgtttctggatgagatcggcgac
atgccactgcatgtgcaggcgcgtctgctgcgcgtgctgcaagagcgtgaagtcaccccg
ctgggcggcggcaagccgcagcgggtcgatttcgaactggtggccgccacccatcagccc
ctcagcgagctggtcaatgcgggacgcttccgggcagatctctactatcgcctgtgcggc
gccaccattgccctgccgccgctgagggagcgtcacgacatcgccggcctgagtcgtgcc
ctgctgaccaggctgtgcggggagcagcaacgtgagctgccgcgcatcacgcccgccttc
ctcgatcgcctcacccagcatgactggcccggcaacgtgcgcgagctggacaacgtgctg
cgtctggcgctggcactgtgcgatgggccgaccctggagccgtgccatgtgatgctggcg
ggcgactgtctcgcctcacagggcgactgccacgcggcagagggcgagattgcccaccag
ccctcgcaaccgagcggcctgccctcgctgcatgatctctccagtgccgaggagctgcag
agtgcgctggacgcgctgggcggcaacgtctcgcgtctcgcgcgggagctgggcatcagc
cgcaccacgctctacaagcgactcggcgcggcctga
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