Cobetia sp. 4B: H2O77_08465
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Entry
H2O77_08465 CDS
T09692
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cobb
Cobetia sp. 4B
Pathway
cobb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cobb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
H2O77_08465
09124 Replication and repair
03420 Nucleotide excision repair
H2O77_08465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cobb03021
]
H2O77_08465
03036 Chromosome and associated proteins [BR:
cobb03036
]
H2O77_08465
03400 DNA repair and recombination proteins [BR:
cobb03400
]
H2O77_08465
Enzymes [BR:
cobb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
H2O77_08465
Transcription machinery [BR:
cobb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
H2O77_08465
Chromosome and associated proteins [BR:
cobb03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
H2O77_08465
DNA repair and recombination proteins [BR:
cobb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
H2O77_08465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
QWN38426
LinkDB
All DBs
Position
complement(1987033..1989933)
Genome browser
AA seq
966 aa
AA seq
DB search
MIKADETHAEPGRYRIAVRELCAFAAREGDLDLRFTPSPTAQQGIRGHQRIVRRRGKDYE
SEISLSGDIGNLTIRGRADGYDPKRNCLEEIKTHRGDLSRQPAHHRALHWAQARVYGALM
CRSRDLEGITLALVYLDIAADATRGTKNEQDEQSEQDAGALDDRDEQTDQADPKSRKAQH
DEQRLEAWWSREALEAELARLAARFSEFAANELAHRSARDSALSRLAFPWPSWRPGQRQL
AEHAYKAVMTGRELLAEAPTGTGKTLATLYPALRAMPASGTDRLFYLTARTPGRALALDA
LDTLAPATDDSEGQDKTPATPLRILELGARSKTCEHPTLACHGESCPLARGFYDRLPAAR
DAALADQRPLNLATTRRHALAHDICPYFLAQELSRWADVIIGDHNHYFDSHALLFALAQA
NDWRTVVLVDESHNLIERARGMYSTELDARQFHFLLKQLSRTGHPAPLRSASRALARQWR
ALEQIEQGADGETQASKVDSKDEGHKAQRLALEALPGDFLKALSQWTGAMGDWLAEPDKA
ASPAATRQQPARATATQAPEQLGLIASDASSAAPSATDTGTATTVSGSASSTARRRVEPD
VEMMEAYFAALTLARLAEGFGDHSLFEVELAATPPARQASLASDSSSSSGAASAAGAEAV
GSEAAAGAVARSRKARGRSVRQIQPRLRCVSPAPWLAPRLRASHATLLFSATLNPPAYHH
RLLGLADDAVWLSVVSPFSATQVQVSRHRLSTRLRDRDASCRPIAELMARQYRQRPGNYL
AFFSSFAYLEQVASTLQLLAPEIPQWRQTRAMTEAERTGFIQRFTPDGQGIGFAVLGGAF
GEGIDLPGSRLIGAFIATLGLAGFSPENEALKQRLATWLDNDAQRRSQPQQAEGDSHDDT
RTPRPVIQPLNADDCTYLYPGLTRVVQAAGRVIRSEQDQGVIHLIDDRFMRPEVARLLPR
WWSPTD
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaggcagacgagacccacgctgaacccggacgctaccggatcgcggtgcgtgaa
ctgtgtgcctttgccgcgcgcgagggcgatctggacctgcgcttcacgccatcgcccact
gcccagcagggcatccgtggtcatcagcgtatcgtgcgccgccgcggcaaggactatgaa
agcgagatatcgctcagcggtgacatcggcaacctgaccatccgtgggcgcgccgatggc
tatgatcccaagcgcaactgcctcgaggagatcaagacccatcgcggcgacctctcccgc
cagcccgcgcaccatcgcgccctgcactgggcccaggcacgcgtctacggcgcactgatg
tgtcgcagccgggacctcgaaggcatcacgctggcgctggtgtatctggatatcgcggcg
gatgcgaccaggggcaccaagaacgagcaggatgagcagagtgagcaggacgcgggcgcc
ctggatgatcgagacgagcagactgaccaggctgaccccaaaagccgcaaggcacagcat
gatgagcagcgtctggaagcctggtggagccgtgaggcgctggaggcggagctggcacgt
ctggcggcacgcttcagcgagttcgccgccaatgagcttgcccatcgcagtgcccgcgac
agcgcgctgagccgcctggcctttccgtggccgagctggcgccccggtcaacgccaactg
gccgagcatgcctacaaggcggtgatgaccggccgcgagctgctcgccgaggcgccgacc
ggcaccggcaagaccctggcgacgctgtatccagcactgcgcgcgatgcccgcaagcggc
acggacaggctcttctacctcaccgcccgcaccccgggccgcgcgctggcactcgacgca
ttggacaccttggcaccagccactgacgacagcgaggggcaggacaagacaccggcgaca
ccgctgcgcattctggaactgggcgcgcgaagcaagacctgcgagcacccgaccctcgcc
tgtcatggtgaatcctgcccgctggcgcgcgggttctatgaccgcctgcccgcggcgcgc
gacgccgcgctcgccgaccaacgccccctgaatctggcgacgacacgccgccacgccctg
gcccacgacatctgcccctattttctcgcccaggagctctcgcgctgggcggatgtcatc
atcggcgaccacaaccactacttcgacagtcatgcgctgctgttcgccctggcccaggcc
aatgattggcgcacggtggtgctggtcgatgagagccacaacctcatcgagcgcgcccgc
ggcatgtacagcaccgaacttgacgcccgccagttccacttcctgctcaagcagttgagc
cgtacgggccatccggctccgctgcgctcggcctcacgcgcgctggctcgccaatggcga
gcgctggagcagatcgaacagggtgctgacggcgagacacaggcaagcaaggtcgatagc
aaggacgaaggccacaaggcgcagcgtcttgcgctggaggctctgcccggcgacttcctc
aaggccttgagccagtggaccggcgcgatgggtgactggttggcggagcctgacaaggcc
gcaagccctgctgcgaccaggcaacagccagcgagagccaccgccacgcaagcccccgaa
cagctgggtctgatcgcaagcgatgcctcctctgctgctccgagtgctaccgatacaggc
actgcaacgacagtctccggttcggcctcctccacggccaggcgccgtgtggaacccgat
gtcgagatgatggaggcgtattttgcggcactgacactggcgcgactcgccgaaggcttc
ggcgatcactcgctgttcgaggtcgaactcgccgccactccccccgcgcggcaggcgtcg
cttgccagcgattcaagctcgagttccggcgcagcatcggctgcaggagcagaagcagta
ggatcagaagcagcagcaggagcagtagcccggtcacgcaaggcccgtgggcgcagcgtg
cgccagatccagccgcgactacgctgcgtcagcccggcgccgtggctggcacctcgcctg
cgcgccagtcacgccaccctgttgttctcggccacgctcaatccaccggcctatcaccat
cgcctgctgggtctggcggacgatgccgtctggctgagtgtcgtttccccgttcagcgcg
acccaggtgcaggtcagtcgtcatcggctctcgacacgcctgcgggatcgcgacgcctcc
tgtcggccgatcgccgagttgatggcgcgccaataccggcagcgcccgggcaactatctg
gcgttcttctcgagcttcgcctatctggaacaggtcgccagcaccctgcaactgctggcg
ccggagattccccaatggcgccagacccgcgcgatgacggaagctgagcgcaccggcttc
attcagcgcttcacacccgacggccaaggcatcggcttcgcagtactgggtggcgccttc
ggcgaagggatcgatctgcccggctcgcggctgatcggggccttcatcgccaccctggga
ctggccggtttcagccccgagaatgaagcgctcaagcagcgtctggccacatggctggac
aacgacgctcagcggcgtagccagccgcaacaggctgaaggcgactcacacgacgatacg
cgcacaccgcgcccggtcatccagccattgaatgccgatgactgcacctatctgtacccg
gggctcaccagagtggtgcaggctgccggccgagtgattcgcagcgagcaggatcagggc
gtgatccacttgatcgatgaccgcttcatgcgcccggaagtcgcacggttgctgccacgc
tggtggtcaccgacggattga
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