Cobetia sp. 4B: H2O77_17015
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Entry
H2O77_17015 CDS
T09692
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cobb
Cobetia sp. 4B
Pathway
cobb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cobb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H2O77_17015 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cobb03021
]
H2O77_17015 (rpoC)
03400 DNA repair and recombination proteins [BR:
cobb03400
]
H2O77_17015 (rpoC)
Enzymes [BR:
cobb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H2O77_17015 (rpoC)
Transcription machinery [BR:
cobb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H2O77_17015 (rpoC)
DNA repair and recombination proteins [BR:
cobb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H2O77_17015 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl
Apocytochr_F_C
DUF7129
Motif
Other DBs
NCBI-ProteinID:
QWN36851
LinkDB
All DBs
Position
complement(4133275..4137516)
Genome browser
AA seq
1413 aa
AA seq
DB search
MKDLVKVLKSQAQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMAHIELASPVAHIWFLKSL
PSRIGMLLDMTLRDIERVLYFESFVVIDPGMTTLEKGHLLNDEQYFEALEEFGDDFDARM
GAEAIKALLEDIELEEEVERLREEIPQTNSETKIKKLSKRLKLLEAFYYSGNKPGWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYAKLQASGHASTIKAAKKMVEREAPEVWDFLADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTREKIGAKGEGMAFANLGEVERAFGTH
SAHLHAMVKVRLTETLKDEESGELYEKTSLHDTTIGRALLFRILPKGMPFELINQVMKKK
AISGLINEAYRRVGLKDTVIFADQLMYTGFRLATWSGASIGVNDFVIPDAKKVIIDAAED
EVKEIEDQFSSGLVTAGEKYNKVIDIWARANDRVAKEMMAGISKETVVNWKGEVVNDEDG
KPMEQDSFNSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVITEADCGTQEGLILHPVIEGGDI
IVPLSQRVLGRVVAQDVIDPVSDEVLIARGTLLDEAWCAQLDTMGVDEIIVRTTIGCETV
HGVCSACYGRDLARGHQVNVGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQ
VKHGGSVRLHNIKSVERADGKLIVVSRSSALAVADDHGREREFYKLPYGAELSVRDGDPV
ASGQSVAKWDPHTHPIVAEVAGQVQFTDMEDGQTINRTTDEMTGLSSIEVIESASRPSAA
RDKRPMIMLVDGSGKHVTLPGSNTPVQYLLPGNAVVSAENGAAVGVGDVIARIPMEASGN
KDITGGLPRVADLFEARRPKEPAILAEISGTVTFGKETKGKRRLTITPVEGDPFELLIPK
WRQISVFEGETVEKGEVISDGPSNPHDILRLLGVAEMTKYITTEVQEVYRLQGVGINDKH
IEVIVRQMLRKVEITDSGDSTFITGDQVEYARVVEENMRLEADGKFPAKFDRILLGITKA
SLATESFISAASFQETTRVLTEASVTGKRDYLRGLKENVVVGRLIPAGTGLAYHDERRRR
RDGLPLAPAPSAQDVEQELGAQLTALDADDDDL
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagttctcaaatcgcaggcgcagtccgaagaattcgacgccatc
aagattaccctggcgtctccggacatgattcgctcgtggtcttttggtgaagtgaagaag
cctgaaaccatcaactaccggacattcaagccggaacgtgatggtcttttctgtgccaag
atctttggcccggtgaaggactacgagtgcctgtgtggcaagtacaagcggatgaagcat
cgcggcatcatctgtgagaagtgtggcgttgaagtgaccaaggcggcagtgcgtcgtgag
cgtatggctcacatcgaactggcgagcccggtcgcgcatatctggttcctgaagtctctg
ccgtctcgtatcggcatgctgctcgacatgactctgcgtgatatcgagcgcgtgctgtac
ttcgaaagcttcgtggtcatcgatccgggcatgacgaccctcgagaaggggcatctgctc
aacgatgagcagtacttcgaagcgctggaagaattcggtgatgatttcgacgcccgcatg
ggtgccgaggccatcaaggcgctgctcgaggacatcgagctggaagaagaggtcgagcgc
ctgcgtgaagagattccgcagaccaactccgagaccaagatcaagaagctgtccaagcgc
ctcaagctgctggaagccttctactattccggcaacaagccgggctggatgatcatggaa
gtgctgccagtgctgccgccggacctgcgtccgctggtaccgctggacggcggccgcttc
gcgacctcggatctgaacgatctgtatcgtcgtgtgatcaaccgcaacaaccgcctcaag
cgtctgctcgacctcaatgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gaatccgtggatgcactgctcgacaacggtcgtcgcggtcgcgccatcaccggttccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggtcgtttccgtcag
aacctgctgggcaagcgtgtcgactactccggtcgttccgtcatcaccgtcggcccgacc
ttgcgtctgcaccagtgtggtctgccgaagaagatggcgcttgaactgttcaagccgttc
atctacgccaagctgcaggcctccggtcacgccagcaccatcaaggccgccaagaagatg
gtcgagcgcgaagccccggaagtctgggatttcctcgccgacgtcatccgcgagcacccg
gtgctgctgaaccgtgcgccgactctgcaccgtctgggtatccaggcgttcgagccgctg
ctgatcgaaggcaaggccatccaactgcacccgctggtctgcgctgcgtacaacgccgac
tttgatggtgaccagatggctgtccacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtcgaccaacaacgtgctgtcgccggccaacggcgagccgatcatc
gtgccgtcccaggacgtcgtgctgggtctgtactacatgacccgcgagaagatcggtgcc
aagggtgagggcatggccttcgcgaacctgggtgaagtcgagcgtgccttcggtacgcac
agcgctcacctgcacgcgatggtcaaggtccgtctgaccgagacgctcaaggacgaagag
tccggcgagctgtacgagaagacgtccctgcacgacaccaccatcggtcgcgcactgctg
ttccgcattctgccgaagggcatgccgttcgagctgatcaaccaggtgatgaagaagaaa
gccatctccggtctgatcaacgaggcgtaccgtcgtgtcggtctgaaggacaccgtcatc
ttcgctgaccagctgatgtacaccggcttccgtctcgcgacgtggtccggcgcctccatc
ggcgtcaacgacttcgtcatcccagacgcgaagaaggtcatcatcgacgcggccgaagac
gaagtgaaagagatcgaagaccagttctcctccggtctcgtgaccgcgggcgagaagtac
aacaaggtcatcgatatctgggcgcgtgccaacgaccgtgtcgccaaggagatgatggca
ggtatctcgaaagagaccgtcgtcaactggaaaggcgaagtggtcaatgacgaagacggc
aagccgatggagcaggactccttcaacagcgtcttcatcatggccgactccggtgcgcgt
ggttccgccgcacagattcgtcagctggctggtatgcgtggcctgatggccaagccggat
ggctcgatcatcgagacgccgatcaccgccaacttccgtgaaggtctgaacgtactccag
tacttcatctccacgcacggtgcccgtaagggtctggcggatacggcactgaagaccgcc
aactccggttacctgacccgtcgtctggtcgatgttgcccaggatctggtcatcaccgaa
gcggattgcggcactcaggaaggtctgattctgcacccggtcatcgaaggcggcgacatc
atcgtcccgctgtcccagcgtgtgctgggtcgtgtcgtggcgcaggacgtgatcgatccg
gtctctgatgaggtcctgatcgcacgcggcacgctgctcgacgaagcctggtgtgcacag
ctcgataccatgggcgtcgatgagatcatcgtgcgtaccaccatcggttgtgaaaccgtg
cacggtgtctgctcggcctgttacggtcgtgacctggcgcgtggccatcaggtcaacgtc
ggtgaagccatcggtgtcatcgcggcacagtccatcggtgagccgggtacccagctgacc
atgcgtaccttccacatcggtggtgccgcttcgcgtgcctccgccgtggacagtgtccag
gtcaagcatggcggcagcgtgcgtctgcacaacatcaagtcggtcgaacgtgccgatggc
aagctgattgtcgtctcgcgttccagcgcactggcagtggcggatgaccacggccgtgag
cgcgaattctacaagctcccgtacggtgctgagctgtccgtacgtgacggcgatccggtg
gcctctggtcagtccgtcgccaagtgggatccgcacactcacccgatcgtcgcggaagtc
gcgggtcaggtgcagttcacggacatggaagatggtcagaccatcaaccgtaccactgac
gaaatgaccggcctgtcctccatcgaggtcatcgaaagcgcttcacgtccgtccgcggca
cgtgacaagcgtccgatgatcatgctggtagacggtagcggcaagcacgtgacactgccg
ggctccaacacgccggtccagtacctgctgccgggcaatgccgtggtgtccgccgagaat
ggcgcagccgtcggtgtgggtgacgtcatcgcacgtatcccgatggaagcgtccggtaac
aaggacatcaccggtggtctgccgcgcgttgccgacctgttcgaagcacgtcgtccgaaa
gagccggccatcctggccgagatctccggtaccgtgaccttcggcaaggaaaccaaaggc
aagcgtcgtctgaccatcacgccggtggaaggtgatccgttcgagctgttgatcccgaaa
tggcgccagatcagcgtcttcgaaggtgaaacggtcgagaagggtgaagtcatctccgat
ggcccgagcaacccgcacgatatcctgcgtctgctcggcgtcgcggaaatgaccaagtac
atcaccaccgaagtccaggaggtctatcgcctccagggtgtcggcatcaacgacaagcac
atcgaagtcatcgtgcgtcagatgctgcgcaaggtcgagatcaccgattctggcgattcc
accttcatcacaggcgaccaggtggaatacgcccgcgtcgtcgaagaaaacatgcgtctc
gaggccgacggcaagttcccggccaagttcgatcgcatcctgctcggtatcaccaaggcg
agcctggcaactgaatcgttcatctccgcggcgtccttccaggaaaccacgcgagttctg
accgaggcatctgtcaccggcaagcgcgattatctccgtggtctgaaggagaatgtcgtg
gtcggtcgcctgattccggcgggtactggcctggcctatcacgacgagcgtcgccgccgt
cgcgatggcctgccgctcgcaccggccccgtcggcacaggacgtcgagcaggaattgggc
gctcagctcactgctctcgacgcggacgacgacgacctctga
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integrated database retrieval system
