Cobetia sp. cqz5-12: F8A90_00050
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Entry
F8A90_00050 CDS
T10568
Symbol
rfaD
Name
(GenBank) ADP-glyceromanno-heptose 6-epimerase
KO
K03274
ADP-L-glycero-D-manno-heptose 6-epimerase [EC:
5.1.3.20
]
Organism
cobc Cobetia sp. cqz5-12
Pathway
cobc00541
Biosynthesis of various nucleotide sugars
cobc01100
Metabolic pathways
cobc01250
Biosynthesis of nucleotide sugars
Module
cobc_M00064
ADP-LDmanHep biosynthesis, sedoheptulose-7P => ADP-LDmanHep
Brite
KEGG Orthology (KO) [BR:
cobc00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
F8A90_00050 (rfaD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
cobc01005
]
F8A90_00050 (rfaD)
Enzymes [BR:
cobc01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.20 ADP-glyceromanno-heptose 6-epimerase
F8A90_00050 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:
cobc01005
]
Core region
F8A90_00050 (rfaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Epimerase
GDP_Man_Dehyd
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
ThiF
KR
Motif
Other DBs
NCBI-ProteinID:
QQK62726
LinkDB
All DBs
Position
12443..13399
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AA seq
318 aa
AA seq
DB search
MIVVTGGAGFIGANIVKALNDRGRTDILVVDDLSDGTKFVNLADLTIADYLDKDDFLIRV
QSSLMGEYAELPKIEAIFHEGACSDTTEWDGQFMLENNFEYSKVLLNFCEANQIPFLYAS
SAATYGDSQVFKETPEFEGPLNVYGYSKLLFDQHVRQRWDSLTTQIVGFRYFNVYGPREQ
HKGKMASVAYHHHTQVKAGENPKLFGAYDGFEAGMQSRDFVYVGDVVDVNLWFLDHPEAS
GIFNLGTGRAEPFKAIAETVIEYYEKGEIEYIDFPENLKGRYQSFTRADIGKLRKAGCNV
EFKTVAQGTRAYLEWLNR
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtcgttaccggaggcgccggcttcatcggtgccaatatcgtcaaggcactcaat
gaccgcggccgtaccgatatcctggtggtggatgacctgagtgacggcaccaagttcgtc
aatctggcggacctgaccatcgccgattacctcgacaaggacgacttcctgattcgtgtc
cagtcgagcctgatgggcgagtatgccgagttgccgaagatcgaggcgatcttccatgaa
ggtgcctgctcggacaccaccgagtgggacggccagttcatgctcgagaacaacttcgag
tactccaaggtgctgctcaacttctgcgaagcgaaccagatccccttcctctacgcgagc
tccgcggcgacctatggcgacagccaggtcttcaaggaaacgccggagttcgaaggtccg
ctcaacgtctacggctactccaagctgctgttcgatcagcacgtgcgtcagcgctgggac
agcctgaccacccagatcgtcggcttccgctatttcaatgtctacggcccgcgtgagcag
cacaagggcaagatggccagcgttgcctatcaccatcacacccaggtgaaggcgggcgag
aaccccaagctgttcggcgcttacgatggctttgaagccggcatgcagagccgtgacttc
gtctatgtcggtgacgtggtcgacgtgaacctgtggttcctcgatcacccggaagcctcc
ggcatcttcaatctggggaccggtcgcgccgagccgttcaaggcgatcgccgagaccgtc
atcgagtactacgagaagggtgagatcgagtacatcgacttcccggaaaacctcaagggt
cgctaccagagcttcacgcgtgccgatatcggcaagctgcgcaaggccggttgcaacgtc
gaattcaagaccgttgcccagggcacgcgcgcctatctcgaatggctgaatcgctga
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