Cobetia sp. cqz5-12: F8A90_02335
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Entry
F8A90_02335 CDS
T10568
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cobc Cobetia sp. cqz5-12
Pathway
cobc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F8A90_02335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobc03019
]
F8A90_02335
03009 Ribosome biogenesis [BR:
cobc03009
]
F8A90_02335
Enzymes [BR:
cobc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F8A90_02335
Messenger RNA biogenesis [BR:
cobc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F8A90_02335
Ribosome biogenesis [BR:
cobc03009
]
Prokaryotic type
rRNA helicases
F8A90_02335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
Motif
Other DBs
NCBI-ProteinID:
QQK63096
LinkDB
All DBs
Position
527162..528868
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AA seq
568 aa
AA seq
DB search
MTTTSVVDRFSDLALLPAVLTSLEKLGYETPSPIQAQTIPSLLEGRDMIGQAQTGTGKTA
AFALPLLTRLDLDRREPQVLVLAPTRELAQQVAVNFTRYGQFMRGLEVATLCGGQDYREQ
MRSLKSGAQIVVGTPGRVIDHLDRKSLNLNGLKALVLDEADEMLRMGFIDDVKRVVADTP
KEAQRVFFSATLPTEIERIVNRYLVDPVKVAIKSESRTASTIEQMMVRVEGGAKLEALSR
LLEVETVDAAIVFVRTRAACTTVVEQLIARGISAAALSGDLDQSLRERTVTRLKRGKVDV
LVATDVAARGLDVARITHVFNYDLPGDSESFVHRTGRTGRAGREGRAITFVSGREMRKVR
WMEQALGQRITERQLPSEEEIRGHRDAAFRARVVEALGSSSNGHRALVQSLVEEGHDPVE
LAAVFVKMARAEETPIQSLPKPGARRNERSERGERSERPERGERRNSAPVAREGMKLYRV
AVGHRDGVKPGQLVGALANEGGIEGSRIGRIDIRNTHSVVELPSGLPTSIVSKMARARVA
GRPLELAEDGAGARPQRREGGNDDRRRA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgacttccgtcgtcgatcgcttcagcgatcttgccctgctgcctgccgtcctg
acctctctcgagaagctgggctacgaaactccgtccccgatccaggctcagaccatcccg
agtctgctcgaaggccgtgacatgatcggccaggcacagacgggtaccggcaagaccgct
gcctttgcactcccgctgttgacccgtctggacctcgaccgccgtgaaccgcaggttctc
gtgctggccccgacccgtgagctggcccaacaggtcgccgtcaacttcacacgttacggt
cagttcatgcgtggcctggaagtggccactctctgcggtggtcaggactaccgcgagcag
atgcgcagcctcaagagcggcgcgcagatcgtcgtcggcaccccgggtcgtgtcatcgac
cacctggaccgcaagagcctgaacctgaacggcctgaaagccctcgtgctggatgaagcc
gatgagatgctgcgcatgggcttcatcgatgacgtcaagcgcgtcgtcgccgataccccg
aaggaagcgcagcgcgtcttcttctccgcgacgctgccgaccgagatcgagcgtatcgtc
aaccgctacctggttgatccggtcaaggttgccatcaagtccgaatcgcgtaccgcttcc
accatcgaacagatgatggtgcgtgtcgaaggcggcgccaagctcgaagcgctgtcacgt
ctgctggaagtcgagaccgtcgatgcggccatcgtcttcgtgcgtacccgtgccgcctgt
accactgtcgtcgaacagctgatcgctcgcggtatctccgcggcagcgctgtccggtgat
ctggaccagtccctgcgcgagcgcaccgtgactcgcctcaagcgtggcaaggtcgacgtg
ctggtcgcgaccgacgtcgccgctcgtggtctggacgtggcgcgcatcacccacgtcttc
aactacgacctgccgggcgacagcgaatccttcgtccaccgtactggccgtactggccgt
gccggtcgtgaaggtcgcgccatcaccttcgtcagcggtcgcgaaatgcgcaaggttcgc
tggatggagcaggccctgggccagcgcatcaccgaacgccagctgccgagcgaagaagag
atccgtggccaccgtgacgccgccttccgtgctcgcgtcgtcgaagccctgggcagcagc
tccaacggtcaccgcgctctggtccagagcctggtcgaagaaggtcacgatccggtcgag
ctggccgctgtcttcgtcaagatggctcgcgccgaagagacgccgatccagtctctgccg
aagccgggtgcgcgtcgcaacgagcgttccgagcgcggtgagcgttccgagcgtccggaa
cgtggtgagcgtcgcaactccgcgccggtcgcacgtgaaggcatgaagctctaccgtgtg
gccgtcggccaccgtgacggcgtcaagccgggccagctggttggcgctctcgccaacgaa
ggcggcatcgaagggtcacgcatcggtcgcatcgacatccgcaacacgcacagtgtcgtg
gaactgccgagcggtctgccgaccagcatcgtgtccaagatggcgcgtgctcgcgtcgct
ggccgcccgctggaactggcagaagacggcgcgggcgctcgtccgcagcgccgtgaaggt
ggcaacgacgaccgtcgtcgcgcctga
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