Cobetia sp. cqz5-12: F8A90_02375
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Entry
F8A90_02375 CDS
T10568
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
cobc Cobetia sp. cqz5-12
Pathway
cobc03440
Homologous recombination
Brite
Enzymes [BR:
cobc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
F8A90_02375 (recB)
DNA repair and recombination proteins [BR:
cobc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
F8A90_02375 (recB)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QQK63103
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Position
542396..546700
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AA seq
1434 aa
AA seq
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MSDTRMEGMRGVESDLRSGVRSGIAQDKEAAMSDEMDQVVQGQALDIPTLPLLGQHLIEA
SAGTGKTFTLAALYVRLVLGPLSGQAASVSYPRPLTPPEILVVTFTEAATAELRDRIRAR
LKQAREALLERASPDPVLAELLAPLLTPSPAEDASRLKAAAARRLDQAARLMDDAAIFTI
HGFCQRMLSRHAFDAGGRFGAELLQDGQSLLTRCVEDYWRCEFYPLAREWQALIRGRWAG
PEALGEELRGLLRDGTPRPLYRDGECLEAPHDLSELLGNAEQWRQQQEAARRAVEESFDE
PAIRDVMSEAFASKALNGNSYKEAELEPRLAATAAWLASGEHDFAADMLDSKKLCWLSQA
KLEKGTKKNCQTPRHPFFAALDLLAEVPAPDAVLLDQVAVHARDSVARALICEKRRLGLW
EFSDLLNDLDHALDPTLNGEASQRLARQIRQELPVAMIDEFQDTDPVQYRIFRRIYPQTA
GDGPTDDDDFSSDAVNGNADEAPSTLLMIGDPKQAIYAFRGADIDTYLAARKVTSSRFTL
PRNFRSSAAMVSAVNALFAQHQAPFGSEDIPFQPVEAQGTRTRLVLRHPDGREEAACALN
LWWASGERLSADDHRRAMSRACRTQIQTLLEGQQRLAAGEPGLVFMDEGDATPRGVAASD
IAVLVRNGREAAAVRGALAEGGIRSVYLSEKSSVFDTPEAFELLQLFEAVAHPRDDRRLR
AALATRLLADDLSLVERLAVDELAWEREVERFDGYHRDWQRRGVLPMLRGVMRDFRVGER
LAARAGGERALTDVLHLGELAQNAAQRLDGEQALLRWWHQALESGHEALDSDSLSQRLES
DEGLVRVVTIHKSKGLEYPIVLLPFMASFRAAEPDRNFGLLTLKQRWLASADVGGDDQGG
ADEEDDNEEVSARRVDQENDALDDSILVKKPSREAIAAADHARLMEDVRLLYVALTRPKF
ACWLGLAPIGKGGFSKQLSLPSTAVGYLLGLSDTPDIEASAIEAALHGWCDQQSAGLARV
SGLPAPAGHEYQPPAERDQHFHGARHFAGGIEDDWWIASYTALLTDARQVTAALEDTADA
ADDRVPEGATEIALEEGEQGLTRPDREVAGQSGPLLAGGLPMTVGEIHLHDFPRGPRPGT
FLHGLLEAVDLDRLGADDYRGELERLVGSRLHFGGFDASWQPRLTDWLEQALTRPLQGFE
GEPILLNRLEAWLPELEFWLPAVHARSLPLDAVVTALEPLPRSRPRLAPRRMHGMLKGFI
DLTFQSGGRWYVLDWKSNYLGERPEDYLGESLARAMVEHRYDLQYVLYTLALHRLLKARL
GEDYDYERCMGGVLYVFLRGLDAGGDSPALAVDEATATPGQPFEETATSGRPLEGTATPG
VATPGVFQRRPSQALIEALDLWLGGDSSALDSLLLHTTDTSPLTQSGQQGAFDV
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgagcgataccagaatggaaggcatgcgcggtgtggagagtgacctgaggagcggcgtg
aggagtggcatcgctcaggacaaggaagcggcaatgagtgacgagatggatcaagtcgtg
cagggccaggccctcgatataccgacgctgcccctgctcggtcagcatctgatcgaggcg
agtgccggcaccggcaagaccttcaccctcgccgcgctctacgtgcggctggtgctcggg
cccttgtccgggcaggcggccagcgtgagctatccgcgtccgctgacgccgccggagatt
ctggtggtgaccttcaccgaagccgccaccgcagagctgcgtgaccgcattcgtgcgcgc
ctcaagcaggcgcgtgaggcgctgctggagcgtgccagtcctgatccggtgctggccgag
ttgctcgcgccgctgctgacaccctcacctgccgaggacgcatcgcgcctcaaggccgcg
gcggcgcggcgcctcgatcaggccgcacgcctgatggatgacgccgccatcttcaccatc
cacggcttttgtcagcgcatgctcagtcggcatgccttcgatgccggcggacgcttcggt
gccgagctgctacaggacggccagtcactgctgacacgttgcgtcgaggattactggcgc
tgcgagttctatccgctggcccgcgagtggcaggccttgatccgtgggcgctgggccggc
ccggaagcactgggagaggagctgcgcggcctgttgcgtgacggcacgccacgcccgctg
tatcgcgacggtgaatgtcttgaggccccgcatgacctgagcgagctgctcggcaatgcc
gaacagtggcgtcagcaacaggaggccgcccgtcgcgccgtcgaggaaagcttcgatgag
ccggccatccgcgacgtgatgagcgaggccttcgccagcaaggcgctcaacggcaacagc
tacaaggaggccgaactcgagcctcgcctggcggcgacggccgcctggctggccagcggc
gagcacgacttcgccgccgacatgctcgacagcaagaagctgtgctggctgagtcaggcc
aagctcgagaagggcaccaagaagaattgccagacgccgcgtcaccccttcttcgcggcg
ctggacctgctggccgaggtaccggcaccggacgccgtgctgctggatcaggtcgccgtg
cacgcgcgtgacagcgtcgcccgcgccctgatctgtgagaagcgccgcctcgggctgtgg
gaattctcggacctgctcaatgatctcgatcacgcgctggacccgacgctcaatggtgag
gccagccagcgtctggcgcgccagattcgtcaggagctgccggtggcgatgatcgacgaa
ttccaggacaccgacccggtccagtaccgcatcttccggcgcatctatccgcagaccgcg
ggcgatggcccgaccgacgacgatgacttcagcagtgatgctgtcaatggcaatgctgac
gaggcgcccagcacgctgttgatgatcggtgatcccaagcaggccatctatgccttccgc
ggcgccgatatcgacacctatctggcggcgcgcaaggtcaccagttcgcgcttcaccctg
ccgcgcaacttccgctccagcgccgcgatggtatccgcggtgaatgcgctgttcgcccag
catcaggcgcccttcggcagtgaggacatccccttccagccggtcgaggcccagggcacg
cgcactcgactggtgctgcgtcatccggatggccgcgaagaggccgcctgtgcgctgaat
ctgtggtgggccagcggtgagcgcctgagcgccgatgaccaccgtcgcgccatgagtcgc
gcctgccgcacccagatccagacactgcttgagggccaacaacgcctggcggcgggcgag
ccggggttggtgttcatggatgaaggggatgcgacgccgcgtggcgtggccgccagcgat
atcgcggtgctggtgcgcaatgggcgcgaggctgcagcggtgcgtggggcgcttgccgaa
ggcggtatccgcagcgtctatctgagcgagaagagctcggtgttcgatacgccggaggcc
ttcgagttgctgcagttgttcgaggccgtggcccatccgcgggatgaccgccgtctgcgc
gcggcgctggcgacgcgcctgttggcggatgacctctcgctggtcgagcgcctcgcggtg
gatgagctggcctgggagcgcgaggtcgagcgcttcgatggctatcaccgtgactggcag
cggcgcggcgtgctgccgatgctgcgcggcgtgatgcgtgacttccgggtcggtgagcgg
ttggcggcgcgcgccgggggtgagcgcgctctgacggacgtgctgcaccttggcgagctg
gcccagaatgccgcccagcgcctcgatggcgagcaggcgctgctgcgctggtggcatcag
gcgctggagtcgggccatgaagcgctggacagcgacagcctcagtcagcgactggaaagt
gatgaggggctggtacgcgtcgtcaccatccacaagtccaaggggcttgagtatcccatc
gtgctgctgccattcatggccagcttccgcgccgccgagccggacaggaatttcggcctg
ctaaccctcaagcagcgctggctggcttcggctgacgtgggaggtgatgaccaaggaggc
gctgacgaggaagacgataacgaggaagtgtctgctcggagagtcgatcaggagaatgac
gcgctcgatgacagcatcctggtcaagaagccctccagggaggccatcgcggcggccgac
catgcacgcctgatggaagatgtgcgtctgctctacgtggcgctgacacggcccaagttc
gcctgctggctgggactggcgcccatcggcaagggcggtttcagcaagcagctgagcctg
ccgtccaccgctgtcggctacctgctcggcctgagtgataccccggacatcgaggccagc
gccatcgaggccgcgctgcacggctggtgtgatcagcagtctgccggcctggcgcgcgtt
tccggcctgcccgcgccagcgggccatgaatatcagcccccggcggagcgcgatcagcac
ttccacggcgcgcgccacttcgcgggcggcatcgaggatgactggtggatcgcctcctac
accgccttgctcaccgatgcccgtcaggtgacggcggcactggaagacaccgccgatgcc
gcggatgaccgcgtgcccgagggcgctaccgagatcgcgctggaagaaggcgagcagggc
ctgacgcgcccggaccgcgaggtggcgggccagtccggcccgctgctggctggcggactg
ccgatgacggtgggcgagatccacctgcatgacttcccgcgcggaccgcgcccggggacc
ttcctgcacggcctgctggaggcggtggatctcgatcgtctcggcgcggatgactatcgc
ggcgagcttgagcggctggtgggctcgcggctgcatttcggtggcttcgatgccagctgg
caaccgcgcctcaccgactggctggagcaggcgctgacccgcccgctgcagggcttcgag
ggcgagcctatcctgctcaaccggctggaggcctggctgccggagctggaattctggctg
cccgctgtccatgcgcgcagtctgccgctggatgccgtggtcaccgcgctggagccgttg
ccgcgctcgcggcccaggctcgcgccacgccgcatgcacggcatgctcaagggcttcatc
gatctgaccttccagtccggcgggcgctggtacgtgctggactggaaatccaactatctg
ggcgagcgccccgaggattatcttggcgagtcgctggcccgcgccatggtcgagcaccgt
tacgacctgcagtacgtgctttataccctcgcgctgcaccgtctgctcaaggcgcgcctc
ggtgaggactacgattacgagcgctgcatgggcggggtgctgtatgtcttcctgcgtggc
ctggatgccggcggtgattcacccgcgcttgcggtggatgaagccacggcgacgcccggc
cagccctttgaagagacagcgacgtccggccggccccttgaagggacagcgacgcccggc
gtggcgacgcccggcgtcttccagcgcagaccatcacaggcgctgatcgaggcgctggat
ctctggctgggcggtgacagctccgcattggacagcctgctccttcacaccaccgacacc
tcgccactcacgcaaagcggccagcagggggccttcgatgtctga
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