Cobetia sp. cqz5-12: F8A90_04210
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Entry
F8A90_04210 CDS
T10568
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cobc Cobetia sp. cqz5-12
Brite
KEGG Orthology (KO) [BR:
cobc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cobc03032
]
F8A90_04210 (topA)
03400 DNA repair and recombination proteins [BR:
cobc03400
]
F8A90_04210 (topA)
Enzymes [BR:
cobc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
F8A90_04210 (topA)
DNA replication proteins [BR:
cobc03032
]
Prokaryotic type
DNA Topoisomerases
F8A90_04210 (topA)
DNA repair and recombination proteins [BR:
cobc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
F8A90_04210 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
QQK63411
LinkDB
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Position
983822..986464
Genome browser
AA seq
880 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFVVKSSVGHIRDLPTSGSGKQATDPKERARQAAETR
KMSPEVKAAHKAQKAKTQLIRRMGVDPENGWEAHYEILPGKEKVVSELTRLAEKADTIYL
ATDLDREGEAIAWHLRETIGGDDSRYKRVVFNEITKKAITAAFDEPGELKMDRVHAQQAR
RYLDRVVGFMVSPLLWAKVARGLSAGRVQSVAVRLIVEREREIRAFIPEEFWDVHAELAA
ASGEAIRFELARQDGKAFRPTSEKETMDRIAALRTAKLAITNREDKPTRSKPNAPFITST
LQQAASGRLGFSVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVATARDFISEEYGSNYL
PEAANVYSSKEGAQEAHEAIRPSEVSRRATDLAGMERDAERLYELIWRQFVACQMLPAEY
LSSTLTIEVDGYELRAKGRVLKFDGYTRVMKPMGKKEEDQSLPDLAIGEKLDLVELQPLQ
HFTKPTARYTEASLVKELEKRGIGRPSTYAAIISTIQDRGYVALENRRFYAEKLGDIVTD
RLSESFKDLMDFGFTARMEDYLDEVANGGRNWRELLDTFYAEFKAELDHAQSEEGMRPNQ
PVPTDIACPTCGREMQIRTASTGVFLGCSGYNLPPKERCKTTIDLLPGDEAVAADAGEDA
ETDALRAKRRCPICATAMDSYLIDEQRKLHVCGNSPDCVGHEVEEGQFRIKGYDGPVIEC
DKCGSDMQLKTGRFGKYFGCTNENCKNTRKLLKSGEVAPPKMDPIPMPELACVKVEDHYV
LRDGASGLFLAASQFPKNRETRPPLVKELKAHADELPEKYHFILDAPDQDPDGRPAQIRF
SRKVKAQYVMTDEEGKATGWKATYDNGRWVVEDKRKGAKS
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagtcactggtgatcgtcgagtcgcccgccaaggccaagaccatcaacaagtat
ctcggcaacgacttcgtggtgaagtcgagtgtcgggcacatccgcgacctgccgaccagc
ggtagcggcaagcaggccaccgaccccaaggaacgtgcccgtcaggcggcggagacccgc
aagatgtcgcccgaggtcaaggcggctcacaaggcgcagaaggccaagacccagttgatc
cgccgcatgggggtcgacccggagaatggctgggaggcgcattacgagatcctgcccggc
aaggaaaaggtcgtttccgagctgacgcgcctggccgagaaagccgacaccatctatctc
gcgacggatctggaccgcgaaggtgaggcgattgcctggcacctgcgcgagaccatcggt
ggcgacgattcgcgttacaagcgtgtggtcttcaacgagatcaccaagaaggcgatcacg
gcggccttcgatgagccgggcgagctgaagatggatcgcgtgcatgcccagcaggcacgc
cgctatctggatcgcgtcgtcggcttcatggtctcgccgctgctgtgggccaaggtcgct
cgtggcctgtccgccggtcgcgtgcagtcggttgccgtgcggctgatcgtcgaacgtgag
cgcgagatccgcgccttcatccccgaagagttctgggatgtccacgctgagctggccgcc
gccagtggtgaagcgatccgtttcgagctggcgcgtcaggatggcaaggccttccgtccg
accagcgagaaggagacgatggatcgcatcgcggcgctgcgcacggccaagctcgcgatc
accaatcgtgaagacaagccgacgcgctccaagccgaacgcgccgttcatcacctcgacc
ctgcagcaggcggccagtggtcgtctcggcttctcggtcaagaagaccatgatgatggcc
cagcgtctctacgaggcgggttacatcacctacatgcgtaccgactcgaccaatctgtcg
gcggacgcggtggccacggcgcgtgacttcatcagcgaagaatacggcagcaactacctg
ccggaagcggccaacgtctactccagcaaggagggcgcccaggaagcgcacgaagcgatt
cgtccttccgaagtgtcgcgccgcgccaccgatctcgccggtatggagcgtgacgccgag
cgtctgtatgagttgatctggcgtcagttcgtggcctgtcagatgctgccggccgaatac
ctgtcctccacgctgaccatcgaagtggatggctacgagctgcgtgccaagggccgtgtg
ctcaagttcgacggctacacgcgtgtcatgaagccgatgggcaagaaggaagaggatcag
tcgctgccggatcttgccatcggcgagaagctggaccttgtcgagctgcagccgctgcag
cacttcaccaagcccacggcgcgatacaccgaggccagcctggtcaaggagctggagaag
cgcggtatcggccgtccgtccacctatgccgccatcatctccaccatccaggaccgtggc
tacgtggcgctggaaaaccgtcgcttctatgccgagaagctgggcgacatcgtcaccgat
cgcctcagcgagtccttcaaggacctgatggacttcggcttcacggcgcgcatggaagac
tatctcgatgaggtggccaatggcgggcgcaactggcgcgagctgctggacaccttctac
gccgagttcaaggccgagctggaccacgcccagtccgaagagggcatgcgtccgaaccag
ccggtgccgacggacatcgcctgcccgacctgtgggcgcgagatgcagatccgtaccgcc
tccaccggggtcttcctgggttgttccggctacaacctgccgcccaaggagcgctgcaag
accaccatcgatctgctgccgggcgatgaagccgtggcggccgatgccggtgaagatgcc
gagacggatgcgctgcgcgccaagcgtcgctgcccgatctgcgccaccgcgatggacagc
tacctgatcgatgagcagcgcaagctgcacgtctgcggcaatagcccggactgtgtcggt
cacgaggtcgaggaaggacagttccgcatcaagggttacgatggcccggtgatcgagtgc
gacaagtgcggctccgacatgcagctcaagaccgggcgtttcggcaagtacttcggctgc
accaacgagaattgcaagaacacccgcaagctgctcaagtccggtgaggtagcgccgccg
aagatggacccgattccgatgccggaacttgcctgcgtcaaggtcgaggaccactacgta
ctgcgcgatggcgccagtggcctgttcctggcggccagtcagttcccgaagaatcgcgag
acgcgtccgccgctggtcaaggagctcaaggcgcatgccgacgagctgccggagaagtat
cacttcattcttgatgccccggatcaggacccggacggacgtccggcgcagattcgcttc
tcgcgcaaggtcaaggctcaatacgtcatgaccgatgaggaaggcaaggcgaccggttgg
aaggcgacctatgacaacggccgctgggtcgtcgaggacaagcgcaagggagccaagagc
tga
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