Cobetia sp. cqz5-12: F8A90_04260
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Entry
F8A90_04260 CDS
T10568
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cobc Cobetia sp. cqz5-12
Pathway
cobc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cobc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F8A90_04260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobc03400
]
F8A90_04260
Enzymes [BR:
cobc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F8A90_04260
DNA repair and recombination proteins [BR:
cobc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F8A90_04260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_22
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QQK63420
LinkDB
All DBs
Position
complement(994446..997973)
Genome browser
AA seq
1175 aa
AA seq
DB search
MFETPLTPPLPRSRRETTFWMLNDPSAAALALARLADADVAPLMVITPDTASAQRLEADL
RFYTRHPERLLPFPDWETLPYDSFSPHQDIVSERLRTLRTLQTSRRAIVPVPVNTLMQRL
APVDYIAGQVFSLAKGDILDREDFRSRLSRAGYRAVETVYEPGEYALRGALIDLFPMGSV
QPLRIDLFDDEIDTLRAFDPDTQRSGDKVEAIEILPAHEYPLTRGAIACFREGFETLFDV
DPRQCILYNDAIKGIPSPGLEQYLPLFFDETATLFDHMGDELRIAMLPGVREAAESHWDA
ITTRYANLGVDPTRPLLPPHRAFVPVNELLGLIKQHERIELVREPNAHAIEFGHQTLPSL
AIDARSADPTQALASFLKQRLNGEHAQRVLFVAETQGRREVVEEQLTPLLRGFGLRSLDD
FASFEHFVDSPAAVGLTVGGLTHGTWVASTQGEDALSSDDTDSYKGLVVITETELYGEVV
RQSRRQARATDDNELAVRHLSELREGAPVVHHTHGVGRYLGLETINAGGQEAEFLALEYA
DGAKLYVPVDSLHLISRYSGASDELAPLHKLGSEQWEKAKRKAAEKIRDTAAELLDVYAR
REARVGHACDFPAEDYARFAASFPFEETPDQAQTIGAVIQDMCAPQPMDRVVCGDVGFGK
TEVAMRAAFLAVNAGRQVVVLVPTTLLAQQHYDNFRDRFADTAVEIALLSRFTSGKGQEA
SLERIRNGQADIVIGTHKLLSKSLELPNMGLLIIDEEHRFGVSQKERLKSLRAEVDILTL
TATPIPRTLNMAMSGIRDLSIIATPPARRLSVKTFVQQRNDGVVKEAILRELLRGGQVYV
LHNEVKTIEESAARIAELVPEANVGVAHGQLPERSLERRMSDFYHKRFNVLVCSTIIETG
IDIPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKAMTRDAVKRLEAIS
ESQDLGAGFTLASHDMEIRGAGELLGDEQSGQMETIGYSLYMEMLDRAVKAIKAGKTPNI
ESPLDEGVEVSLNLPALIPADYLHDVQQRLMMYKRISNAENASDLRELQVEMIDRFGLLP
EPVKTLFRQTQLRQRAQALGIIKLEAGAGRGRIIFGAQTPVDPLTLVNLIQRQSDVYKLE
GADTLRFATDMDDAEKRFSFCETLLDLLNAKTKAA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgttcgagactccgctgacgcccccgttgccgcgctcgcgccgcgaaaccaccttctgg
atgctcaatgaccccagcgccgcggcgctggcgctggcgcgcctggccgatgccgatgta
gcgccgctgatggtcatcacgccggataccgccagcgcccagcgcctggaagccgacctg
cgcttctatacgcgccatcccgagcgcctgctgcccttccccgactgggaaacgctgccc
tacgacagcttctcaccgcaccaggacatcgtctcggagcgtctgcgcaccctgcgtacc
ctgcagaccagccgccgcgccatcgtgccggtaccggtcaacaccctgatgcagcgcctc
gcgccggtggattacatcgcaggccaggtcttcagtctcgccaagggtgacatcctcgat
cgcgaggatttccgctcacgcctgtcgcgggccggttaccgcgccgtggagacggtctat
gaaccaggcgaatacgccctgcgcggcgcgttgatcgacctgttccccatgggcagcgtg
cagccgctgcgcatcgatctgttcgatgacgagatcgacaccctgcgcgccttcgaccct
gacacccagcgcagtggcgacaaggtcgaggcgatcgagattctgcctgcacatgaatat
ccactgacccgtggcgccatcgcctgcttccgcgagggcttcgagacgctgttcgatgtc
gacccgcgccagtgcattctctacaacgacgccatcaagggcattccctcgccggggctc
gagcagtatctgccgctgttcttcgacgagaccgcgacgctcttcgatcacatgggcgac
gaactgcgcatcgccatgctgcccggcgtgcgcgaggcggccgagagccactgggatgcc
atcaccacacgctacgccaatctgggcgtcgacccgacccgcccgctgctgccaccgcat
cgcgccttcgtgccggtcaatgagctgctgggcctgatcaagcagcacgagcgcatcgag
ctggtgcgcgagcccaatgcccacgccatcgaattcggccaccagacactgccgagcctg
gccatcgatgcgcgtagcgccgacccgacccaggcgctggccagctttctcaagcagcgc
ctgaacggcgagcatgcccagcgcgtgctgttcgtcgccgagacccagggccgccgcgaa
gtcgtcgaggagcagctcaccccgctgctgcgcggcttcgggctgcgcagcctggatgac
ttcgcgagcttcgagcacttcgtggatagcccagccgccgttggcctgaccgtcggtggc
ctgacgcatggcacctgggtggccagcacgcagggagaagatgcgctgtccagtgatgac
accgacagttacaaggggctggtggtcatcaccgagaccgagctttacggcgaagtggta
cgtcagagccgccgccaggcgcgcgccaccgatgacaacgagctggccgtgcgacacctc
tcggagctgcgtgaaggcgcgccagtggtgcaccacacccacggcgtcggccgctatctg
gggctggagaccatcaacgccggtggccaggaggccgagttcctcgccctcgaatacgcc
gatggcgccaagctctacgtgccggtggacagcctgcacctgatctcacgctattccggg
gccagcgacgagctggcaccgctgcacaagctgggctccgagcagtgggagaaggccaag
cgcaaggcggccgagaagatccgcgataccgccgccgagctgctggatgtctatgcacgc
cgcgaggcgcgtgtcggccatgcctgcgacttccccgccgaggactatgcacgcttcgcg
gccagcttccccttcgaggaaactccggaccaggcgcagaccatcggcgcggtgatccag
gacatgtgcgccccccagccgatggatcgcgtggtatgtggcgatgtcggcttcggcaag
acggaagtcgcgatgcgcgccgccttcctcgccgtcaatgccggccgacaggtggtggtg
ctggtgcccaccaccctgctcgcccagcagcactacgacaacttccgcgaccgcttcgcc
gacaccgcggtggagatcgccctgctgtcgcgcttcaccagcggcaagggccaggaagct
tcgctcgagcgcatcaggaacggccaggccgatatcgtgatcggcacccacaagctgctc
tcaaagtcgctggagctgcccaacatggggcttctgatcatcgatgaggagcaccgcttc
ggcgtctcccagaaggagcgcctcaagagtctgcgcgccgaggtcgacatcctgaccctg
accgccacgccgattccgcgcacgctgaacatggcgatgagcggcatccgcgacctgtcc
atcatcgccacgccgccggcgcgtcgcctgtcggtgaagactttcgtgcagcagcgcaac
gacggcgtggtcaaggaagccatcctgcgcgagctgctacgcggcgggcaggtctacgtg
ctgcacaatgaggtcaagaccatcgaggagagcgccgcgcgcatcgcggagctggtgccg
gaggccaatgtcggcgtcgcccacggccagctgccggagcgtagcctggagcggcgcatg
tcggacttctatcacaagcgcttcaacgtgctggtgtgctcgaccatcatcgagaccggc
atcgacatcccgagcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcc
cagctgcatcagctgcgtggccgcgtcgggcgctcgcaccaccaggcctacgcctacctg
ctgaccccgcaccccaaggcgatgacccgcgatgcggtcaagcgcctggaggcgatcagc
gaatcccaggacctcggtgccggcttcacgctggcctcccatgacatggagatccgcggc
gcgggtgagctgctgggtgacgagcagtccggccagatggaaaccatcggttactcgctg
tacatggagatgctcgatcgcgccgtgaaggccatcaaggcaggcaagacgcccaatatc
gagtcgccgctggatgaaggcgtcgaggtcagcctcaatctgccggcactgattccggcc
gattatctgcacgacgtccagcagcgtctgatgatgtacaagcgcatcagcaacgccgag
aacgcaagcgacctgcgcgaactgcaggtcgagatgatcgaccgtttcggcctgctgccg
gaaccggtcaagaccctgttccgccagacccagctgcgccagcgcgcccaggccctgggc
atcatcaagctggaggccggcgccgggcggggtcgcatcatcttcggcgcccagacgccg
gtcgatccgctgacgctggtcaacctgatccagcgccagtcggatgtctacaagctggaa
ggcgccgacaccctgcgcttcgctaccgacatggatgacgccgagaaacgcttcagtttc
tgtgagaccttgctggacctgctcaacgccaagaccaaggccgcctga
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