Cobetia sp. cqz5-12: F8A90_04395
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Entry
F8A90_04395 CDS
T10568
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cobc Cobetia sp. cqz5-12
Pathway
cobc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F8A90_04395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobc03019
]
F8A90_04395
03009 Ribosome biogenesis [BR:
cobc03009
]
F8A90_04395
Enzymes [BR:
cobc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F8A90_04395
Messenger RNA biogenesis [BR:
cobc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F8A90_04395
Ribosome biogenesis [BR:
cobc03009
]
Prokaryotic type
rRNA processing factors
F8A90_04395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QQK63445
LinkDB
All DBs
Position
complement(1026092..1030258)
Genome browser
AA seq
1388 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRIEPSLEACFVDF
GAERHGFLPLKEISREYFSKDPGQGRPNIREVLKEGQEVIVQVDKEERGNKGAALTTFIS
LAGRFLVLMPNNPRAGGISRRIEGEERAQLKEAMNSLTLPDKMGVIVRTAGIGKSAEELQ
WDLDYLAQVWDAVTKAASSRPAPFLIYRESNVIIRAMRDYLRNDIGEVLIDSSEVQEEAL
SFVRQVMPSYQQKIKLYEDDVPLFSRFQIESQIETAYQREVKLPSGGAIVIDHTEALVSI
DINSARATRGSDIEETALQTNLEASDEIARQLRLRDIGGLVVIDFIDMTPARNQREVENR
VRDALKIDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCDGQGTIRDVRSMALS
IMRLIEEEAMKERSSQIRAILPVPVATYLLNEKRATLFDIERRQGVNVVLLPNPELDTPH
YEVVRLRDDHVDEDGADKSSFELSVETEVGKEPDPNFDKPPARTEAAVKSVSHTTPAPVA
APEAPVAVAETADSSSDSDSRNGNGKNNGNRRRNGNGSSNGRNRQEQRNESRNDTRSEGR
NDSRQSSRNDNRQGNRSSQGNDTRAQASKQEVVAQSSAQTPARTATPATGGGLLSRLARG
FSRLLGNDSDTAVPAKSSEARKALEKARERRETVSEASAPAAARNDSRNGRNAERSNDRN
NDRSNDGRGNERDDNRKDSRRRNDNASRNNDGESRNSGNDADSNSQNDGRSNNKRRQRND
RGNRRKSNESRQDSQQEIVTNDSKPQAEPEQTPQADNSPKAEARSSDSQNAKADNASKRD
SGKRSDKPGRGEKPAKTDKAEQVDSKQARESIKAAEQAEQVEQQVSSEDQQTRNNPRVRS
RQHALNPQAVEEQKSLKAMTLAGPQAAATSAAAAVPAIAEEGAEAVNATTAAPQGEANAP
QGNDSAQQVENSTAAQHAPTTVEQSASADLTAAAAPEISEPSNETLRETVAPESAPSDVQ
ASESEPAEVAEPVVEAPIEAPAEEASEAPATGAHQAQKTEQHAAQRTEQHAVQQPSVHQP
QASAADNAVDTPAVTAAEVAPEAAADEQSLKESVTSEAAVPEASAAAEQSAQAPATEAQA
PVAEAEEAVAAETDTASQPAQPVAQEPGVEEAAVEQPVQEAVRQEAPQQTETSEAKVAES
ADVASTEIEPAVSTERTTDTVAVAAEGSQSAEGSQSAEGSQSAEGSDAAEGSANAEGADA
TAEGAESAVNVSASVENAPAEAAFATAERHDNVAVAQAVSDDSHTGEVADSEQNQAPSEQ
GETTAAEGVQQDSTQPATETRRRRGERAYNDPREVRRREREAAERAAAHQTSAETQDTTA
QDDSNTSH
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaacgcgacccagccggaagagctgcgcgtcgcactggtcgac
ggacaacgcctttacgatctcgacatcgagtccggcgcccgcgaacagaagaaagccaac
atctaccgcggcaagatcacccgcatcgagcccagcctcgaagcctgcttcgtcgacttc
ggcgccgaacgccacggtttcctgccactcaaggaaatctcccgcgagtacttctccaag
gaccccggccagggccgtcccaacattcgtgaagtgctcaaggaaggccaggaagtcatc
gtccaggtcgacaaggaagagcgtggcaacaagggtgccgccctgaccaccttcatcagt
ctggctggccgcttcctcgtgctgatgcccaacaacccacgtgccggtggtatctcccgc
cgcatcgagggcgaagagcgcgctcagctgaaggaagcgatgaacagcctgaccctgccg
gacaagatgggcgtcatcgtgcgcaccgccggcatcggcaagagcgccgaagaactgcag
tgggacctcgactacctggcacaggtgtgggacgcggtgaccaaggccgcttccagccgc
cctgcccccttcctgatctaccgtgaatccaacgtcatcatccgtgccatgcgcgactac
ctgcgcaatgacatcggcgaagtgctgatcgactcttcggaagtccaggaagaagcgctg
tccttcgtgcgtcaggtgatgccgagctaccagcagaagatcaagctctacgaagacgac
gtgccgctgttctcgcgcttccagatcgaatcccagatcgagaccgcctaccagcgtgaa
gtgaagctgccctccggtggcgccatcgtcatcgaccacaccgaagcccttgtctccatc
gatatcaactccgctcgcgccacccgcggcagtgatatcgaggaaaccgcgctgcagacc
aacctggaggcctccgacgagatcgcccgccagctgcgtctgcgcgacatcggcggcctg
gtggtgatcgatttcatcgacatgacgccggcacgcaaccagcgtgaagtcgagaatcgt
gtgcgcgacgcgctcaagatcgaccgcgctcgcgtgcagatcggtcgcatctcacgcttc
ggcctgatggaaatgtcgcgccagcgtctgcgtccgtccctgggcgagaccagcggcgtg
gtctgcccgcgctgtgacggccagggtaccattcgtgacgtgcgctccatggcgctctcc
atcatgcgcctgatcgaagaagaggccatgaaggagcgcagctcgcagatccgcgccatc
ctgccggtgccggtcgcgacctacctgctcaacgagaagcgcgccacgctgttcgacatc
gagcgccgtcagggcgtgaatgtcgtgctgctaccgaacccggagctcgatacgccgcac
tacgaagtcgtgcgtctgcgtgatgaccacgtcgatgaagacggtgccgacaagtccagc
ttcgagctgtccgtcgagaccgaggtcggcaaggaaccggatccgaacttcgacaagccg
ccggcgcgcactgaagccgccgtcaagagcgtgtcccacaccacgcctgccccggttgcc
gcaccggaagcgcctgtagcagtggccgagaccgctgacagcagcagtgacagcgatagc
cgcaacggcaacggcaagaacaacggcaaccgtcgtcgcaacggcaacggcagcagcaat
ggccgtaaccgtcaggagcagcgcaacgagtctcgtaatgacactcgcagcgaaggccgc
aacgacagccgtcagagctcgcgcaatgacaaccgtcagggcaaccgttcgagccagggc
aatgacacccgcgctcaggccagcaagcaggaagtcgtggcgcagtcgtcagcccagact
cccgccaggactgccactccggccaccggtggcggcctgctgtcgcgcctggcccgaggc
ttcagccgcctgctgggcaatgacagcgataccgccgtgccggccaagtccagcgaagcc
cgcaaggcactggaaaaggcccgtgagcgtcgcgagaccgtcagtgaagccagcgctccg
gcagcggctcgcaacgactcccgcaatggccgcaacgctgaacgtagcaacgatcgtaac
aacgaccgcagcaatgacggccgtggcaacgagcgtgatgacaaccgcaaggattcccgt
cgtcgcaatgacaacgcgtcacgcaacaacgacggcgagtcacgcaacagcggcaacgac
gctgacagcaacagccagaacgatggccgcagcaacaacaagcgtcgtcagcgcaacgac
cgtggcaaccgtcgcaagtccaacgagtcgcgtcaggacagccagcaggaaatcgtcacc
aacgacagcaagccgcaggccgaaccggagcagacgccgcaggctgacaacagcccgaaa
gccgaagccaggagcagcgacagccagaacgccaaggccgacaacgccagcaagcgcgat
tccggcaagcgcagcgacaagccggggcgtggtgaaaagccggccaagactgacaaggcc
gagcaggtcgacagcaagcaggcacgcgagtccatcaaggcagccgaacaggccgagcag
gtggagcagcaggtcagcagcgaagaccagcagacccgcaacaacccgcgtgtgcgcagc
cgtcagcacgctctgaacccgcaggcggtcgaagagcagaagtcgctcaaggccatgacg
ctggcaggcccgcaggcagccgctacttcggcagccgctgcggtgccggccattgccgag
gaaggtgccgaagccgtcaacgccaccaccgctgccccgcagggcgaagccaatgccccg
caaggcaacgacagcgcccagcaggttgaaaacagcaccgcggcacagcacgcaccgacc
accgtcgagcaatctgccagcgcagacctcacggcagccgccgcaccggaaatcagcgag
ccgagcaacgagacgctgagagagacggtcgcccctgagtcagcgccatccgacgtgcag
gcgtccgagtctgagccagcggaagtggccgagccggtcgtcgaagcgccgatcgaagca
cctgccgaagaggcgtccgaagcgcctgccactggcgctcaccaggcgcagaagactgag
cagcacgccgcccagcgcactgagcagcacgccgtccagcagccaagcgtgcaccagccg
caggccagcgcagctgacaacgccgtcgacacgccggccgtcaccgcggcagaagtcgcg
ccggaagccgcggccgatgagcagtcgctgaaggaaagcgtgaccagcgaagccgctgtg
cctgaagcgtcagccgccgccgagcaaagcgcccaggcaccggccaccgaagctcaggca
cctgtcgctgaagcagaggaagcggtcgccgctgaaacagacactgccagccagcctgcg
cagcctgtggcgcaagaacctggcgtggaagaagccgccgttgaacagcctgtacaggag
gccgtgcgtcaagaggctcctcagcagactgagaccagtgaggcgaaggtggcagaaagc
gctgacgtggccagtactgagattgagcctgccgtcagcactgagcgcaccacagatact
gtcgctgtagctgcggaaggctctcaatcagctgaaggctctcaatcagctgaaggctct
caatcggctgaaggctctgatgctgctgaaggctctgcaaacgctgaaggcgctgatgct
actgctgaaggtgccgaaagcgccgtcaacgtcagcgccagcgtcgagaatgcgccggcc
gaggcagcgttcgcgactgccgagcgtcacgacaatgtcgccgtggcgcaagccgtgagc
gacgactcccacacaggggaagtcgctgacagcgagcagaatcaggcaccgagcgagcaa
ggcgagacgacagcggcagaaggcgtgcagcaggacagcacgcagccagccaccgagacc
cgccgtcgtcgtggcgaacgcgcctacaacgatccgcgcgaagtgcgtcgtcgtgagcgt
gaagctgccgaacgtgctgctgcacaccagaccagcgcggagactcaggacacgaccgct
caggatgacagcaacacgtcacactga
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