Cobetia sp. cqz5-12: F8A90_06230
Help
Entry
F8A90_06230 CDS
T10568
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cobc Cobetia sp. cqz5-12
Pathway
cobc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F8A90_06230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobc03019
]
F8A90_06230
Enzymes [BR:
cobc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F8A90_06230
Messenger RNA biogenesis [BR:
cobc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F8A90_06230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QQK63769
LinkDB
All DBs
Position
complement(1444733..1445944)
Genome browser
AA seq
403 aa
AA seq
DB search
MPFSALGLSDSIVKAVTEQGYQTPTPIQEKAIPVVLAGDNLIAAAQTGTGKTASFVLPIL
QTLQQAPKVRAKRVHAVILTPTRELAIQVEDNIQHYARYLEVSSMAMYGGVEIEPQQQRL
IEGVDILVATPGRLLDMLTRRAIHLDETRTLVIDEADRMLDMGFIADINKIVEKLPRERQ
NLLFSATLSAQVRVLAKTAVMDAVEIMIAPENVTAPDISQYLITVDKELKSALLSHLIHE
KQWQQALIFIETKRGAAKLVSQLEKRDIAAESFHSGRSQAMREQLLADFKAGTIKYLVAT
GVAARGIDIDDLQRVVNYDLPDAAEDYVHRIGRTGRAGASGEAISLVSRDDFRNLCAIEQ
HLGYFVTREVVEGFAPKLAVPASNSDYAPKSANKSRRRQPNRR
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgccattttctgcccttggtttgagcgattccatcgtcaaggccgtcaccgagcaaggc
taccagaccccgactcccatccaggagaaggcgatccccgtcgtgctggccggtgacaac
ctgatcgccgccgcccagacgggtaccggcaagacggcaagcttcgtgctgcccatcctg
cagaccctgcaacaggcacccaaggtgcgcgccaagcgcgtacatgccgtcatcctgacg
ccgacgcgggagctggcgattcaggtcgaagacaacatccagcactacgcccggtatctg
gaagtcagctccatggcgatgtatggcggcgtggagatcgaaccccagcaacagcgcctg
atcgagggcgtggacatcctggtggcgacgcctggccgcctgctggacatgctgacccgc
cgcgcgatccacctcgacgagacacgtaccctcgtcatcgatgaagcggaccgcatgctc
gacatgggcttcatcgccgacatcaacaagatcgtcgagaagttgcccagagagcgtcag
aacctgctgttctcggccacgctctcggctcaggtgcgcgtgctcgccaagaccgcggtg
atggacgccgtcgagatcatgatcgctccggagaacgtcaccgcgccggatatcagccag
tatctgatcacggtcgacaaggagctcaagtccgcccttctgagccatctgattcacgag
aagcagtggcagcaggcgttgatcttcatcgagactaagcgtggcgccgccaagctggtc
agtcagctggagaagcgtgacatcgccgccgagtccttccacagcggtcgcagccaggca
atgcgcgagcagctgctggccgacttcaaggccggcaccatcaagtatctcgtggctacc
ggcgttgccgcgcggggcatcgacatcgatgatctgcagcgcgtggtcaactatgacctg
ccggacgccgccgaggattatgtccaccgcatcgggcgtaccggccgtgccggggccagc
ggtgaagccatatcgctggtctcgcgtgatgacttccgcaacctgtgcgccatcgagcaa
cacctgggctatttcgtgacgcgcgaagtcgtggaaggctttgcgcccaagctcgcggta
ccggcctcgaacagcgactacgcccccaagtccgcaaacaagagccgtcgtcgccagccc
aaccgccgctga
DBGET
integrated database retrieval system
