KEGG   Cobetia sp. cqz5-12: F8A90_06865
Entry
F8A90_06865       CDS       T10568                                 
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
  KO
K11891  type VI secretion system protein ImpL
Organism
cobc  Cobetia sp. cqz5-12
Pathway
cobc03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:cobc00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    F8A90_06865 (tssM)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:cobc02044]
    F8A90_06865 (tssM)
Secretion system [BR:cobc02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   F8A90_06865 (tssM)
SSDB
Motif
Pfam: IcmF-related_N IcmF-related OmpA AAA_16 MMR_HSR1 HSCB_C DUF6338
Other DBs
NCBI-ProteinID: QQK63875
LinkDB
Position
1606785..1609277
AA seq 830 aa
MNKLKLHVLKYYILKYRPYWLGVLFFLGIFLIWGVGVSLGYPSLDSLLVGILAFLVASAL
YLLLLYRGVGERQDVESLLIQNADDAVLSAAPQDREEVSLLRERLLAALDRMRKSASEKR
SGWFTRQGDVLYTLPWYLVIGQPAVGKSTLVSRSGLDFPFAERESARVAGIGGTRHCDWF
FSSEAVLLDTAGRYVSSEEEVGKWRAFLDMLRRYRPRQPLNGLIVAVSIDEVLQNRHDVE
ALAHQLRERIQESYERLGAALPIYLVFTKSDHIPGFREFHAQLAPAQRDEVLGMSFPHQG
YAEADWRTRFSEAMTRLVARCAGTGERCLVEGDIVRTREAPAAVEFPRELEALAPHLTDF
VTELLRVNPYQAAPLLRGFYFTSALSEGQASTAAHGRNVASRFAVTERHAPGHQDGKPLF
VSGLFSRVVLPDQHLVGLYGGANLQRRRQLRWVWLALALAAAMCLAWAVSFTANTRELGA
LDQALDAAYEEDAGEPNAYAQWATLDALRDSAARYDSRHHESGVPWSLGFGLYEGETLEP
ELRDVYFGALRQTMLVPIASNLNQSLFMLPTISVHDREDGPRETDIHVPGVEDHAQPRDN
SAQALADFGNSTLKTYLSLSRTPREDIEPDWLRSEMPVYWYPAITQGEDMPRDSRDLEYA
SRQVNFYAEQVVRPDVPRLEDNTFLVSSSRNYIDGLLDRSLSTVETITLESDTLFAFGRA
DYSGLQGEGQRQLNAIAERLSNTPNLGRITITGHADPIGSATANRRISLQRAETVRTYLV
GKGLPGELIGAEGAGSDRPLVKCDGEMSRTDKIACLAPNRRVEIEVRALN
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgaacaagctaaagctccacgttctcaagtactacatcctcaaataccgcccgtattgg
ttgggcgtgctgttcttcctgggcatcttcctgatctggggcgtcggtgtgagcttgggc
tacccgtcactggatagcctgctggtcggcattctggcattcctcgtcgcctccgccctc
tatctgttgctgctctaccgtggggtgggcgagcgtcaggacgtcgagtcattgctgatc
cagaacgccgatgacgccgtgctcagtgccgcgccccaggaccgcgaggaagtcagcctg
ctgcgcgagcgcctgctggcggcgctggaccgtatgcgcaagagtgccagcgagaagcgt
agtggctggttcacccgtcagggggacgtgctctatacgctgccctggtatctggtgatc
ggtcagcctgcggtgggcaagagcacgctggtctcgcgctcagggctggatttccccttc
gcggagcgcgaaagcgcacgtgtcgcgggcatcggcggcacccgtcactgtgactggttc
ttcagcagtgaggccgtgctgctggataccgcagggcgttacgtcagctccgaggaggaa
gtcggcaagtggcgtgccttcctcgacatgctgcgtcgctatcgtccgcgtcagccgctc
aacgggttgatcgtcgcggtcagcatcgatgaagtgctccagaaccgccatgacgtcgag
gccctggcacatcagctgcgcgagcgtatccaggaaagctacgagcgtctcggtgcggca
ctgcccatctacctggtgttcaccaagagcgaccacattcccggctttcgcgagtttcat
gctcagctggccccggcgcagcgcgatgaagtgctgggcatgagtttcccgcaccagggc
tatgccgaggcggattggcgtactcgtttcagtgaggcgatgactcgtctggtggcacgt
tgtgcgggtaccggtgagcgctgtctggtggagggtgacatcgtgcgcacccgcgaggca
ccggcggcggtggaattcccgcgtgagctggaagcgctggctccgcacctgaccgatttc
gtcaccgagctgctcagggtcaatccctatcaggcggcaccgctgttgcgcggcttctac
ttcaccagcgcgctctccgaggggcaggccagcacggccgcccacgggcgtaacgtggcg
tcacgcttcgccgttaccgagcgtcatgcgccgggccatcaggatggcaagccactgttc
gtctcggggctgttctcacgagtggtgctgccggaccagcacctggtcggcctttatggc
ggtgccaacctgcagcgtcggcgtcagctgcgttgggtgtggctggcgctggcgctcgcc
gcggccatgtgcctggcgtgggcggtgtccttcaccgccaatacccgggagctgggggcg
ctggatcaggcattggatgccgcctacgaggaggatgccggcgagccgaatgcctatgcc
cagtgggcgacgctggatgccctgcgtgacagcgcggcccgctacgacagccgtcatcac
gagagtggcgtgccctggtcgctcggcttcgggctctatgaaggcgagacgctggaacct
gagctgcgcgatgtctatttcggcgcgctgcggcagacgatgctggtgccgatcgccagc
aacctcaaccagtcgctgttcatgctgccgaccatcagcgtgcatgaccgcgaggatggc
ccgcgcgagaccgatatccatgtcccgggagtcgaggaccacgcccagccgcgtgacaac
tcggcccaggcgctggcggacttcggcaacagtaccctgaagacctacctgtccctgtcg
cgcacgccgcgcgaggacatcgaaccggactggctgcgtagcgagatgccggtctactgg
tatccggccatcacccagggggaggatatgccgcgcgacagtcgtgatctggaatatgcc
agccgtcaggtcaatttctatgccgagcaggtcgtgcgcccggacgtgccgcgtctggaa
gacaacaccttcctggtgtcatccagtcgcaactacatcgatggcctgctggaccgctcc
ctgagcaccgtcgagaccatcacactggaatccgacaccctgttcgccttcgggcgtgcg
gattactcggggctgcagggcgaggggcagcgtcagctgaatgccatcgccgaacgactt
tccaatacgccgaacctggggcgcatcaccatcaccggccacgccgacccgatcgggtcc
gccactgccaaccgtcggatctcgctgcagcgcgccgagaccgtgcgcacctatctggtg
ggcaaggggctgccgggtgagctgatcggcgcggaaggggccggcagtgatcgtccgctg
gtcaagtgcgatggcgagatgtcgcgcaccgacaagatcgcctgtctggcgcccaatcgt
cgtgtcgagattgaagtgcgtgcgctgaactga

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