Cobetia sp. cqz5-12: F8A90_15655
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Entry
F8A90_15655 CDS
T10568
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cobc Cobetia sp. cqz5-12
Pathway
cobc03030
DNA replication
cobc03430
Mismatch repair
cobc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cobc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F8A90_15655 (dnaE)
03430 Mismatch repair
F8A90_15655 (dnaE)
03440 Homologous recombination
F8A90_15655 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cobc03032
]
F8A90_15655 (dnaE)
03400 DNA repair and recombination proteins [BR:
cobc03400
]
F8A90_15655 (dnaE)
Enzymes [BR:
cobc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
F8A90_15655 (dnaE)
DNA replication proteins [BR:
cobc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
F8A90_15655 (dnaE)
DNA repair and recombination proteins [BR:
cobc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
F8A90_15655 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QQK65382
LinkDB
All DBs
Position
complement(3786605..3790105)
Genome browser
AA seq
1166 aa
AA seq
DB search
MTTPFVHLRVHTEFSLVDGLPGVKPLIKATAAAGQPAVAVTDEANLFGLVKFYSNARAAG
IKPIIGADMWLINPQDATRPYRLTLLAMNDTGYRNLTELISRGWTDGQKQDRAYLEKEWI
FEQAEGLIVLSGGREGEIGRHLLSDHEDSARALLGEWKAVFGDRFYLELTRTQRQYEEEC
LHLSVALAEATDTPVVATNDVRFLKREDYWAHETRVSIGEGKALDDPRRETRYSDEQYLK
SAEEMSELFSDIPEALENSVLIAARCSVTVQLGTYFLPEFPVPEGMTMDQFFRKVSHDGL
TERLEKLYPRDKHPRDSEAWAEIEQRYRTRLDFELDIILQMGFPGYFLIVMDFIQWGKDN
GVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEKRDRV
IDYVAERYGRNAVSQIVTFGTMAAKAVVRDVARAQGKPYSLGDKLSKLIPFEVGMTLEKA
IEQEPQLKEFIDNDEEAQEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFAPLLCDEDG
SGLVVQFDKNDVEEAGLVKFDFLGLRTLTIIDWATEMVDKIREREGLAPLDIDDIPLDDA
KTFDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGPLQSGMVDDFINR
KHGRSEVSYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGQADMLRRAMGK
KKPEEMAKQRAGFMEGCAGKGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTGWL
KAHYPGPFMAAVISTEMQTIEKVVPLIEECRHIGLTVTPPDVNLGGYKFTVDLEGRVVYG
LGAIRGVGEGPIDAIVSARAEGGPFSDIFDFCKRIDAKKINKRTLEALIRSGALDNIGPS
RAVLMLAVEDALKAASQNHANNDVGITDMFGDAFSEPETDVYAGYRKAREWTDKERLTGE
KDTLGLYLTGHPIDEYEGELKRFINARISDLKPSREPQRIAGLVIAMRTMKSKRGDTMAF
VTLDDRTGRIEASMFGELYDQVRNKLVPDSVVIVEGEVSQDDYSGGLRLRGKDVTPIIDA
RARFGEAVEMSIAAEDIGGRFTQQLTTLLTPHLASEGLPMRLRYRNAAAEAWLELGEQWR
VAPSDELLIQLGEVEGQRGVRLKYRD
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgccctttgttcacctgcgcgttcacaccgagttctccctcgtcgatggtctg
cccggcgtcaagccgctgatcaaggcgaccgccgcggcgggccagccggctgtcgcggtg
actgacgaggccaacctgttcgggctggtcaagttctactccaatgcgcgcgctgccggc
atcaagccgatcatcggtgccgacatgtggctgatcaatccccaggatgccacgcgcccg
tatcgcctcacgctgctggcgatgaacgacaccggctatcgcaacctcaccgagctgatc
tcgcgcggctggaccgatggtcagaagcaggaccgcgcctacctcgagaaagagtggatc
ttcgagcaggccgagggcctgatcgtgctgtccggaggccgtgaaggcgagatcggccgt
catctgctgtcggaccacgaggacagcgcccgggcgctgctcggtgaatggaaggcggtg
ttcggggatcgcttctatctggagctgacccgcacccagcgtcagtacgaggaagagtgt
ctgcacctgtcggtggcgctggccgaggccaccgatacgccggtggtcgctaccaatgat
gtgcgcttcctcaagcgtgaggactactgggcccacgagacgcgtgtctccatcggcgaa
ggcaaggcgctggatgacccgcggcgcgagacccgctacagcgatgagcagtaccttaag
agtgccgaggagatgagcgagctgttctccgacattcccgaggcgctcgagaacagtgtg
ctgatcgcggcgcgctgctcggtgaccgtgcagctgggcacctacttcctgcccgagttc
ccggtgccggaaggcatgacgatggaccagttcttccgcaaggtctcgcatgatggtctg
acggagcgcctcgagaagctctatccgcgcgacaagcatccacgcgacagcgaggcctgg
gccgagatcgagcagcgctaccgcacgcggttggacttcgagctcgacatcatcctgcag
atgggcttccccggttacttcctgatcgtcatggacttcatccagtggggcaaggacaac
ggcgtgccggtaggacccggccgtggttccggtgccggctcgctggtggcctatgcccag
aagatcaccgatctggacccactggaatatgacctgctgttcgagcgcttcctgaacccg
gaacgtgtctccatgcccgactttgacgtcgatttctgcatggagaagcgtgaccgcgtg
atcgattacgtggccgagcgctacgggcgcaacgcggtctcgcagatcgtcaccttcggt
accatggccgccaaggccgtggtacgtgacgtggcgcgcgcccagggcaagccgtactcg
ttgggcgacaagctctccaagctgattcccttcgaggtcggcatgacgctggagaaggcc
attgagcaggagccgcagctcaaggaattcatcgacaacgacgaggaagcccaggaaatc
tgggagatggcgctcaagctcgagggcaccacgcgcggcaccggcaagcacgccgggggc
gtggtgatcgcgccgaccaagctgaccgacttcgcgccgctgctgtgtgatgaagacggc
agcggtctggtggtccagttcgacaagaacgacgtcgaggaggccgggctggtcaagttc
gacttcctggggctgcgcaccctgaccatcatcgactgggcgaccgagatggtcgacaag
atccgtgagcgggaagggctggcgccgctggatatcgatgacattccgctggatgacgcc
aagaccttcgacatgctgcagaaggcggagacgacggccgtcttccagctggaatcccgc
ggcatgaaggagctgatcaagaagctcaagcccgattgcctggaagacatgatcgccctg
gtggccctgttccgtcccggcccgctgcagtccggcatggtggatgacttcatcaaccgc
aagcacggtcgttccgaagtgtcttatccacacccggattaccagcatgagctgctcaag
ccggtactggagccgacctacggcatcatcctgtaccaggagcaggtcatgcagatcgcg
caggtgctggccggctacacgctgggccaggccgacatgctgcgccgtgcgatgggcaag
aagaagccggaagagatggccaagcagcgcgccggcttcatggaaggctgtgcgggcaag
ggcatcgacaaggacctggccggcaacatcttcgacctggtggagaaatttgccggttac
ggtttcaacaagtcgcactcggcggcctatggcctcgtctcctatcagacgggctggctg
aaggcgcactatccggggccgttcatggctgcggtgatctcgaccgagatgcagaccatc
gagaaggtggtgccgctgatcgaggagtgccgccatatcggcctcacggtcacgccgccg
gatgtgaacctcggtggctacaagttcaccgtcgacctggaagggcgcgtcgtctacggc
ctgggcgcgattcgcggcgtgggcgagggcccgattgatgccatcgtcagcgcgcgcgcc
gaaggtggcccgttcagtgacatcttcgacttctgcaagcgcatcgatgccaagaagatc
aacaagcgcaccctggaagcgctgatccgctccggcgcgctggacaatatcggcccgtcg
cgtgcggtgctgatgctggcggtggaggatgcgctcaaggccgcctcccagaatcacgcc
aacaatgatgtcggcatcaccgacatgttcggcgatgccttcagcgagccggaaaccgat
gtctacgccggctatcgcaaggcgcgcgagtggaccgacaaggagcgtctcaccggcgag
aaggacacgctggggctctatctgaccggccatcccatcgatgagtacgagggtgagctc
aagcgcttcatcaatgcgcgcatcagtgacctcaagccgtcgcgggagccgcagcgcatc
gccgggctggtgatcgccatgcgcaccatgaagtccaagcggggcgataccatggccttc
gtgaccctggacgaccgcaccgggcgtatcgaggcctcgatgttcggtgagctctacgat
caggtgcgcaacaagctggtgcctgacagtgtggtgatcgtcgagggcgaggtcagccag
gatgactattccggtggcctgcgtctgcgtggcaaggacgtcacgccgatcatcgatgca
cgggcgcgcttcggcgaggcggtcgagatgagcatcgccgccgaggacatcggtggtcgc
ttcactcagcagctgaccaccttgctgacgccacacctggccagcgaaggcctgccgatg
cgcctgcgttatcgcaacgcggcagcggaggcctggctggagctgggcgagcaatggcgc
gttgcgcccagtgacgagttgttgatccagctgggtgaggtggaaggccagcgcggtgtg
cgcctcaagtaccgtgattga
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