Cobetia sp. cqz5-12: F8A90_16100
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Entry
F8A90_16100 CDS
T10568
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
cobc Cobetia sp. cqz5-12
Pathway
cobc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cobc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
F8A90_16100 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobc03400
]
F8A90_16100 (sbcB)
Enzymes [BR:
cobc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
F8A90_16100 (sbcB)
DNA repair and recombination proteins [BR:
cobc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
F8A90_16100 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
F8A90_16100 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
F8A90_16100 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
HTH_20
Motif
Other DBs
NCBI-ProteinID:
QQK65454
LinkDB
All DBs
Position
complement(3895069..3896544)
Genome browser
AA seq
491 aa
AA seq
DB search
MAEPTFLWHDYETFGADPRRDRPSQFAAIRTDADFNEIGEPLTLYCKPADDFLPQPMACL
ITGITPQQAERRGIPEAEFAGRINDEMSVPGTCTLGYNSLRFDDEVSRHLFYRNFLDPYG
REWQNGNSRWDLIDVVRAFHALRPEGIEWPRREDGAPSFRLEHLTAANGIEHAGAHDALV
DVRATIALARLLKSRNARLFDYLLKLRNKRHVASLLDIGARKPMLHISRRYPASRACGAL
VVPLAEHPSNANGVIVYDLSVDPAPLMELSPEEIRARVFASADDLAEGEERIPLKVIHLN
KSPVLLPANALKDVSGPHEGEYGEIAARFKIDPAQCRVHWKWLKDNAGVGVKVAQVFAEA
PPAGPADPDLMLYSGGFFSPADRKEMERVRATHPEALDDTPFAFQDGRLEEMLFRYRARS
YGYTLNSAERERWEQWRWERMNDEQVASLTVKGFVSEIQRLAQSEQDPDRVQILEELAMY
VEGIMPPQAFG
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
gtggcagagcccaccttcctgtggcacgactacgagaccttcggcgccgacccgcgccgt
gaccgtccttcgcagttcgcggccatccgtaccgatgctgacttcaatgagatcggcgag
ccgctgaccctctattgcaagccggccgatgacttcctgccccagccgatggcatgcctg
atcaccggcatcaccccgcagcaggccgagcgtcgcggcattcccgaggccgagttcgcc
gggcgcatcaatgacgagatgagcgtgccggggacctgcacgctgggctacaacagcctg
cgctttgatgatgaagtcagccgtcatctgttctaccgcaacttcctcgatccctacgga
cgcgagtggcagaacggcaattcgcgctgggacctgatcgatgttgtgcgcgccttccat
gccctgcgcccggaaggcatcgaatggcccaggcgagaagatggtgcacccagcttccgt
ctggagcacctgacggcggccaatggtatcgagcacgccggcgcgcatgacgcgctggtg
gatgtgcgcgccaccatcgcgctggcacgcctgctcaagtcgcgcaatgcacggctgttc
gattatctgctcaagctgcgcaacaagcgccatgtcgccagtctgctggatatcggcgca
cgcaagccgatgttgcacatctcgcgtcgctatccggcctcgcgggcctgtggcgcactg
gtggtaccgctggcggagcatccttcgaatgccaatggcgtgatcgtctatgacctctcg
gtcgacccggcgccgttgatggagctgtcaccggaagagatccgagcccgtgtcttcgcc
agtgccgatgacctcgcggaaggcgaggagaggattccgctcaaggtcatccatctcaac
aagagtccggtactgctgccggccaatgcgctcaaggatgtgtccgggccgcatgagggc
gagtacggcgagatcgccgcccgcttcaagatcgaccccgcccagtgtcgcgtgcactgg
aagtggctgaaggacaacgccggtgtcggcgtgaaggtggcgcaggtatttgccgaggcg
ccgccggccggtccggccgatccggacctgatgctctactccggtggcttcttctcgccc
gcggaccgcaaggagatggagcgggtacgcgccacccatcccgaggcgctggacgatacg
ccgtttgccttccaggatggtcggctcgaggagatgctgttccgctatcgtgcgcgcagc
tacggctacacgctcaactccgccgagcgcgaacgctgggagcagtggcgctgggagcgc
atgaacgatgagcaggtcgcgagcctgaccgtgaagggcttcgtcagcgagatccagcgg
ctggcccagagcgaacaggacccggaccgcgtgcagattctcgaagaactggcgatgtac
gtggaaggcatcatgccgccacaggccttcggctga
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