Cobetia sp. D5: U0O11_00550
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Entry
U0O11_00550 CDS
T10202
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
cobd Cobetia sp. D5
Pathway
cobd00300
Lysine biosynthesis
cobd00470
D-Amino acid metabolism
cobd01100
Metabolic pathways
cobd01110
Biosynthesis of secondary metabolites
cobd01120
Microbial metabolism in diverse environments
cobd01230
Biosynthesis of amino acids
Module
cobd_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
cobd00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
U0O11_00550 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
U0O11_00550 (lysA)
Enzymes [BR:
cobd01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
U0O11_00550 (lysA)
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GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
DUF1955
Motif
Other DBs
NCBI-ProteinID:
WVS98721
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Position
complement(118901..120172)
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AA seq
423 aa
AA seq
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MDHFVYQDGVLHAEDVSLATLAEQFGTPCYVYSRATLERHFKAYQDALGDHPHLICYAVK
ANSNLAVLNVLARLGAGFDIVSAGELERVIKAGGDPAKVVFSGVAKQAGEMERALELGIK
CFNVESLPELERLNAVAGRLGRVAPVSLRINPDVDAGTHPYISTGLKANKFGIPVEQALE
VYEIAHAMEHVQVVGADCHIGSQLTELAPFLDSLERLLVLLDRLRERGIVIEHLDLGGGL
GVPYQNETPPEPFAYASALLERLARYEHGSEMTLLFEPGRSIAANAGVLLTRVEYLKPGE
EKNFAIIDAGMNDLIRPSLYQAWQNIVTVDTRETRKSASYDVVGPVCETGDFLGKDRELA
IAPGDLLAVRSSGAYGFVMASSYNSRCRPAEVMVDGPEMHLVRRRERLEELWTGEQLLPE
GDA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggatcacttcgtttatcaggatggcgtgctgcacgccgaagacgtctcgctcgccacg
ctggccgagcagttcggcacgccgtgctacgtctacagccgtgccacgctcgagcgccac
ttcaaggcctatcaggatgcgctgggcgaccacccgcatctcatctgctatgccgtgaag
gccaattccaacctggcggtgctcaatgtgctggcacgcctgggcgccggcttcgacatc
gtctccgccggtgagctggagcgcgtcatcaaggccggcggcgaccccgccaaggtggtc
ttctccggcgtcgccaagcaggcaggcgagatggaacgtgcgctggagctgggcatcaag
tgcttcaacgtcgagtcgctgccggagcttgagcgcctcaacgccgtcgccggccgtctc
ggacgcgtcgcgccggtgtcactgcgcatcaatcccgacgtcgatgccggcactcacccg
tacatctccactggcctcaaggccaacaagttcggcattccggtcgaacaggcgctggag
gtctacgagatcgcccacgccatggagcacgtgcaggtggtcggcgccgactgccatatc
ggctcccagctgaccgagctggcacccttcctcgattccctcgaacgcctgctggtgctg
ctggatcgcctgcgtgaacgcggcatcgtcatcgagcacctcgatctcggcggcggcctc
ggcgtgccctaccagaacgagaccccaccggagcccttcgcctacgccagcgccctgctg
gagcgtctggcccgctatgagcacggcagcgagatgacgctgctgttcgaaccgggccgc
tccatcgccgccaacgccggcgtgctgctgacccgtgtcgagtacctcaagcccggtgaa
gagaagaacttcgccatcatcgatgccggcatgaatgacctgatccgtccgtcgctgtac
caggcgtggcagaacatcgtcaccgtcgacacgcgcgagacacgcaagtccgccagctac
gatgtggtcggcccggtctgcgagaccggtgacttcctcggcaaggaccgcgaactggcc
atcgcgccgggcgacctgcttgccgtgcgctcctccggtgcctacggcttcgtcatggcc
tcgagctacaacagccgctgccgtcctgccgaggtgatggtcgatggccccgagatgcac
ctggtgcgtcgtcgcgagcgcctcgaagaactgtggaccggtgagcaactgctgccggaa
ggtgatgcctga
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