Cobetia sp. D5: U0O11_00800
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Entry
U0O11_00800 CDS
T10202
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
cobd Cobetia sp. D5
Pathway
cobd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0O11_00800 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobd03019
]
U0O11_00800 (pcnB)
Enzymes [BR:
cobd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
U0O11_00800 (pcnB)
Messenger RNA biogenesis [BR:
cobd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
U0O11_00800 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
WVS98765
LinkDB
All DBs
Position
complement(174653..176053)
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AA seq
466 aa
AA seq
DB search
MLKGFTRFLQRPGDRLKTLFNATDAPAAPLPSLRVIPRDEHPVSRRQLSENALKVLYRLQ
SGGYQAYLVGGCIRDALLGQRPKDFDVATNATPEQVRELFRNARIIGRRFRIVHVRFGRE
VIEVTTFRGKPADSTPSQHTQQSEDGMLLRDNVFGSIEEDALRRDFTINALYYDVSDFTI
HDWANGVRDIEARMIRLIGDPETRYREDPVRMLRAVRFAGKLDFDIEEATAEPMYELAPL
LLQIPPARMFEEVLKLFMSGYALETFHLLREFGLFQMLFPETEESFAHYHWSMPLIEKAL
ASTDDRIREDKPVTPAFLYAALLWPGVKARTDQLIASGMPDIPAAHQAAQQAIARQLNHT
SIPKRFSIPMREIWDMQAKLPRRRGKRAFQTREHPRFRAAYDFLLLREFAGEVKPGLGKW
WTDFQEVDARTQVTMIEGVSDEGPAGSKPVGTKRRGKRRRNGRGQG
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgctcaaaggatttacccgctttctacaacgccccggtgaccgcttgaagacgcttttc
aatgcaactgacgcgcccgcggccccattgcccagcctgcgtgtgataccgcgggatgag
catcccgtgtcccgccgccagctcagcgagaatgcgctgaaggtactctatcgcctgcaa
agcggtggatatcaggcctatctggtcggtggctgtatccgtgatgccctgctcggacaa
cgccccaaggacttcgacgtggccaccaacgccacgccggaacaggtccgcgagctgttc
cgcaatgcccgcatcatcggccgtcgtttccgtatcgtgcacgtgcgcttcggtcgtgag
gtgatcgaggtcaccaccttccgcggcaagccggccgatagcacgcccagccagcatacc
cagcagtcggaagacggcatgctgctgcgcgacaacgtcttcggctccatcgaggaggac
gcgctgcgccgcgacttcacgatcaatgccctctattacgacgtgtccgacttcacgatc
cacgactgggccaatggtgtacgcgatatcgaagcgcgcatgattcgcctgatcggcgac
ccggaaacacgctatcgcgaagatccggtgcgcatgctgcgtgccgtccgcttcgccggc
aagctggacttcgacatcgaggaggccacggccgaaccaatgtacgaactggccccgctg
ctgctgcagattccgccggcgcgcatgttcgaggaagtactcaagctgttcatgtccggc
tatgcactggaaaccttccatctcctgcgtgagtttggtctgttccagatgctgttcccc
gagacggaagagagcttcgcgcattatcactggtccatgccgctgatcgagaaggcgctg
gccagcacggacgaccgcatccgcgaagacaagccggtcacgccggccttcctgtatgcc
gccctgctgtggccgggcgtcaaggcgcgtaccgaccagctgatcgccagtggcatgccc
gatattccggcagcccaccaggcggctcagcaggcgatcgctcgccagctcaaccatacc
tcgatcccgaagcgcttcagcattccgatgcgcgagatctgggacatgcaggccaagttg
ccgcgtcgccgtggcaaacgcgccttccagacccgcgagcatccgcgcttccgcgccgcc
tacgacttcctgctgctgcgcgaattcgccggcgaagtgaagccggggctgggcaagtgg
tggaccgacttccaggaagtcgatgctcgcacccaggtcacgatgatcgaaggtgtctcc
gatgaaggccccgccggcagcaagccggtcggcaccaagcgtcgcggcaagcgtcggcgc
aatggtcgcggccagggctga
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