Cobetia sp. D5: U0O11_02370
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Entry
U0O11_02370 CDS
T10202
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
cobd Cobetia sp. D5
Pathway
cobd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cobd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
U0O11_02370 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobd03400
]
U0O11_02370 (recB)
Enzymes [BR:
cobd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
U0O11_02370 (recB)
DNA repair and recombination proteins [BR:
cobd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
U0O11_02370 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WVS99046
LinkDB
All DBs
Position
547632..551861
Genome browser
AA seq
1409 aa
AA seq
DB search
MSDTGVEDMRGVESGVRSGIAQDKEAAMCDEMDQSQQGQALDIPTLPLLGQHLIEASAGT
GKTFTLAALYVRLVLGPLPGQDAGVCYPRPLTPPEILVVTFTEAATAELRDRIRARLKQA
REALLERASPDPVLAELLAPLLTPSPAEDAARLKAAAARRLDQAARLMDDAAIFTIHGFC
QRMLSRHAFDAGGRFGAELLQDGQSLLARCVEDYWRCEFYPLAREWQALIRGRWAGPDAL
GEELRGLLRDGTPRPLYRDGECLEAPDDLSELLGNAEQWRQQQEAARRAVEESFDEAAIR
AVMGEAFASKALNGNSYKEAELEPRLAATAAWLASGEHDFAADMLDSKKLCWLSQAKLEK
GTKKNCQTPRHPFFAALDMLAEVPAPDAVLLDQVAVHARDSVARALICEKRRLGLWEFSD
LLNDLDHALDPTLNGEASQRLARQIRQELPVAMIDEFQDTDPVQYRIFRRIYPQTAGDGP
TDGDAFSNDVGIDAGEAPSTLLMIGDPKQAIYAFRGADIDTYLAARKVTSSRFTLPRNFR
SSAAMVSAVNALFAQHQAPFGSEDIPFQPVEAQGTRTRLVLRHPDGREEAACALNLWWAS
GERLSADDHRRAMSGACRAQIQALLEGQQRLAAGEPGLVFMDEGDATPRGVAASDIAVLV
RNGREAAAVRGALAEGGIRSVYLSEKSSVFDTPEAFELLQLFEAVAHPRDDRRLRAALAT
RLLAEDLSLVERLAVDELAWEREVERFDGYHRDWQRRGVLPMLRGVMRDFRVGERLAARA
GGERALTDVLHLGELAQNAAQRLDGEQALLRWWHQALESGHEALDSDSLSQRLESDEGLV
RVVTIHKSKGLEYPIVLLPFMASFRAAEPDRNFGLLTLKQRWLATADVEGDDVEGADEED
DNEEVSAQGVDQEDDALDDSILVKKPSREAIAAADHARLMEDVRLLYVALTRPKFACWLG
LAPIGKGGFSKQLSLPSTAVGYLLGLSDTPDIEASAIEAALHGWCDQQSAGLARVSGLPA
PAGHEYQPPAERDQHFHGARHFAGGIEDDWWIASYTALLTDARQVTAALGDTADAADDRV
PEGATEIALEEGEQGLTRPDREVAGQSGPLLAGGLPMTVGEIHLHDFPRGPRPGTFLHGL
LEAVDLDRLGADDYRGELERLVGSRLHFGGFDASWQPRLTDWLEQALTRPLQGFEGEPIL
LNRLEAWLPELEFWLPAVHARSLPLDAVVTALEPLPRSRPRLAPRRMHGMLKGFIDLTFQ
SGGRWYVLDWKSNYLGERPEDYLGESLARAMVEHRYDLQYVLYTLALHRLLKARLGEDYD
YERCMGGVLYVFLRGLDAGGDSPALAVDEAHDLGNMATPGVFQRQPSQALIEALDLWLGG
DSSALDSLLLNTTDTSPLTQSGQQGAFDV
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgagcgataccggagtggaagacatgcgcggtgtggagagtggcgtgaggagtggcatc
gctcaggacaaggaagcggcaatgtgtgacgagatggatcagagccagcagggccaggcc
ctcgatattccgacactgccgctgctcggtcagcacctgatcgaggcgagtgccggcacc
ggcaagaccttcaccctcgccgcgctctacgtgcggctggtgctcgggcccttgcccggc
caggacgcgggcgtctgctatccgcgcccgctgacgccgccggagatactggtggtgacc
ttcaccgaagccgccaccgccgagctgcgtgaccgcattcgggcacgcctcaagcaggcg
cgtgaggcgctgctggagcgtgccagtcctgatccggtgctggccgagttgctcgcaccg
ctgctgacaccatcacctgccgaggacgcagcgcgcctcaaggctgccgcggcacggcgc
ctcgatcaggccgcgcgtctgatggatgacgccgccatcttcaccatccacggcttctgc
cagcgcatgctcagtcgacatgccttcgatgccggcggacgcttcggcgccgagctgttg
caggacggccagtcactgctggcgcgctgcgtcgaggattactggcgctgcgagttctat
ccgctggcccgcgagtggcaggcgttgatccgtgggcgctgggccgggcctgatgctttg
ggcgaggagctgcgcggcctgctgcgggatggcacgccacgcccgctgtaccgcgacggc
gaatgtcttgaggccccggacgacctgagcgagctgctcggcaatgccgaacagtggcgt
cagcagcaggaggccgcgcgtcgcgccgtcgaggaaagcttcgatgaggcggccatccgc
gcggtgatgggcgaggccttcgccagcaaggcgctcaacggcaacagctacaaggaagcc
gagctcgagcctcgcctggcggcgacggccgcctggctggccagcggcgagcacgacttc
gccgccgacatgctcgacagcaagaagctgtgctggctgagtcaggccaagctcgagaag
ggcaccaagaagaactgccagacgccgcgccatcccttcttcgcggcgctggacatgctg
gccgaggtgcccgccccggacgccgtgctgctggatcaggtcgccgtgcacgcgcgtgac
agcgtcgcccgcgccctgatctgcgagaagcgccgcctcgggctgtgggagttctcggac
ctgctcaatgatctcgatcacgcgctggacccgacgctcaatggcgaggccagccagcga
ctggcgcgccagatccgtcaggaactgccggtggcgatgatcgacgaattccaggacacc
gatccggtccagtaccgcatcttccggcgcatctatccgcagacggcgggcgatggcccg
accgatggcgatgccttcagcaacgatgtcggcatcgatgctggcgaggcgcccagcacg
ctgttgatgatcggtgatcccaagcaggccatctatgccttccgcggcgccgatatcgac
acctatctggcggcgcgcaaggtcaccagctcgcgcttcaccctgccgcgcaacttccgc
tccagcgccgcgatggtatccgcggtgaatgccctgttcgcccagcatcaggcgcccttc
ggcagtgaggacattcccttccagccggtcgaggcccagggcacgcgcacccggctggtg
ctgcgtcatccggatggccgcgaagaggccgcctgcgcgctgaatctgtggtgggccagc
ggtgagcgtctgagcgccgatgaccaccgccgcgccatgagtggtgcctgtcgcgcccag
atccaggccttgctggaaggacagcagcgtctggcggcgggcgagccggggctggtgttc
atggacgaaggggatgcgacgccacgtggcgtggccgccagcgatatcgccgtgctggtg
cgcaacggccgcgaggctgcggcggtgcgtggcgcgctggccgaaggcggtatccgcagc
gtctatctgagcgagaagagctcggtattcgacacgccggaggccttcgagctgctgcag
ctgttcgaggccgtggcccatccgcgtgatgaccgccgtctgcgcgcggcgctggcgacg
cggctgctggccgaggatctctcgctggtcgaacgcctcgcggtggatgagctggcctgg
gagcgtgaggtcgagcgcttcgatggctatcaccgcgactggcagcggcgcggcgtgctg
ccgatgctgcgcggcgtgatgcgcgacttcagggtcggtgagcggttggcggcgcgcgcc
gggggcgagcgcgccctgacagatgtgctgcatctgggtgagctggcccagaatgccgcc
cagcgccttgatggcgagcaggcgttgctgcgctggtggcatcaggcgctggaatccggc
catgaagcgctggatagcgacagcctcagtcagcgtctggaaagtgatgaggggctagtg
cgtgtcgtcaccatccacaagtccaaggggctcgagtatcccatcgtgctgctgccgttc
atggccagcttccgcgcggccgagccggacaggaatttcggcctgctgaccctcaagcag
cgctggctggccacggctgacgtggaaggtgatgacgtggaaggcgctgacgaggaagac
gataacgaggaagtgtctgctcagggagtcgatcaggaggatgacgctctcgatgacagc
atcctggtcaagaagccctccagggaggccatcgcggcggccgaccatgcacgtctgatg
gaagatgtgcgtctgctctacgtggcgctgacgcgtcccaagttcgcctgctggctgggg
ctggcacccatcggcaagggcggtttcagcaagcagctgagcctgccgtccaccgccgtt
ggctacctgcttggcctgagtgataccccggatatcgaggccagcgccatcgaggccgcg
ctgcacggctggtgtgatcagcagtctgccggactggcgcgcgtttccggcctgcccgca
ccagcaggccatgaatatcagcccccggcggagcgcgatcagcacttccacggcgcgcgc
cacttcgcgggcggtatcgaggatgactggtggatcgcctcctacaccgccttgctcacc
gatgcccgtcaggtgacggcggcgctgggagacaccgccgatgccgcggatgaccgcgtg
cccgagggcgccaccgagatcgcgctggaagagggcgagcagggcctgacccgcccggac
cgcgaggtggcggggcagtccggcccgctgctggccggcggcctgccgatgacggtgggc
gagatccatctgcatgatttcccgcgcggaccgcgcccggggaccttcctgcatggcctg
ctggaggcggtggacctcgatcgcctcggcgcggatgactatcgcggcgagcttgaacgg
ctggtgggctcgcggctgcatttcggtggcttcgatgccagctggcagccgcgcctcacc
gactggctggagcaggcgctgacccgcccgctgcagggcttcgagggcgagcctatcctg
ctcaaccggctggaggcctggctgccggagctggaattctggctgccggccgtgcacgca
cgcagtctgccgctggatgccgtggtcactgcgctggaaccgttgccgcgctcgcggccc
aggctcgcgccacgccgcatgcacggcatgctcaagggcttcatcgatctgaccttccag
tctggcggccgctggtacgtgctggactggaaatccaactacctgggcgaacgccccgag
gattatcttggcgagtcactggcccgcgcgatggtcgagcaccgctacgacctgcaatac
gtgctctacaccctcgcgctgcatcgtctgctcaaggcgcgcctcggtgaggactacgat
tacgagcgctgcatgggcggggtgctgtatgtcttcctgcgtggcctggatgccggcggt
gactcacccgcgcttgcggtggatgaggcacatgatctgggcaatatggcgacgcccggt
gtcttccagcgccagccatcacaggcgctgatcgaggcgctggatctctggctgggcggc
gacagctccgcactggacagcctgctcctcaacaccaccgacacctcgccactcacccaa
agcggccagcagggggccttcgatgtctga
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