Cobetia sp. D5: U0O11_02375
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Entry
U0O11_02375 CDS
T10202
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cobd Cobetia sp. D5
Pathway
cobd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cobd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
U0O11_02375 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobd03400
]
U0O11_02375 (recD)
Enzymes [BR:
cobd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
U0O11_02375 (recD)
DNA repair and recombination proteins [BR:
cobd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
U0O11_02375 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
AAA_22
Helicase_RecD
UvrD_C
UvrD-helicase
AAA_28
T2SSE
nSTAND3
TrwB_AAD_bind
NTPase_1
SLFN-g3_helicase
CbiA
AAA_16
AAA_5
Motif
Other DBs
NCBI-ProteinID:
WVS99047
LinkDB
All DBs
Position
551866..553998
Genome browser
AA seq
710 aa
AA seq
DB search
MSVPTQQLSAAPDAPTADTLLATLGLWVELGWLRRVDAHLVRFMARHVPETPASVLLAAA
LASHQLGRGHVCLSLSRALAEPRATLSLPPLEQSEAHLAEVSVALPEAFLADLDAGRWAE
QLAASRLVSVLAQADSPAGHLPLRPLVLVGERLYLRRYWQAEREVAAGLRARMGPSEEGE
ARVSDALGERLRELFASNRPDPHGEPDWQKLACALALRQRLTVISGGPGTGKTTTVTRLL
ALLQAQALAGGTDGAEGELESDETGHPHERRALDIRLVAPTGKAAARLSESIRGAVAKLE
VPDAVRAAIPREASTVHRLLGARPDSRHFRHHAGNPLALDLLVVDEASMVDLDLMAALLG
ALPAHARLILLGDKDQLASVEAGAVLGDLCEHALPPRYSPALCADLSRLTGETLEQAIAV
PDGQDLEETSATRGRLADHVVVLQKSYRFSADSGIGALARASNAGDRQALREVWKAGYRD
IAWLKLSGPEDRDLEKLVVNGYRPALEAVRERRPAREVIDLLLEFQLLCALRRGPYGVDG
LNQRVARVLMRRGLIADERGWYAGRPVMVTRNDRALGLYNGDVGITLPDPAAGGRLRVFF
PVEEEATPDTERDGQDTDIQRFHRGVRAVLPSRLEAVETVFAMTVHKSQGSEFRHVLFVL
PEGANPILTRELVYTGITRAKSRVTLAGTRRETLEGAIERRVVRASGLVL
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgccaacgcagcagctcagcgctgcccctgacgccccgactgccgacaccctg
ctcgccacgctcggactgtgggtggagctgggctggcttaggcgcgtcgatgcccatctg
gtgcgcttcatggcgcgccatgtgccggagaccccggccagcgtattgctggcggccgcg
ttggccagccaccagctggggcgcgggcatgtgtgcctgtcgctgtcgcgggcgctggcc
gagccacgcgcgaccctgtcactgccgccgctggagcagtccgaggcgcatctggccgag
gtcagcgtggccctgccggaagccttcctggcggatctcgatgccgggcgctgggccgag
cagctggcggcatcgcggctggtcagcgtgctggcgcaggccgattccccggcaggccat
ctgccgctgcgcccgctggtgctggtgggcgagcgtctctatctgcgccgttactggcag
gccgagcgtgaagtcgcggcggggctgcgtgcgcggatggggccaagcgaggagggcgag
gcgcgggtcagcgatgcgctgggcgagcgtctgcgcgagctgttcgccagcaatcggccg
gacccgcacggcgagccggactggcagaagctggcctgtgccctggcgttgcgtcagcgc
ctgacggtgatctccggcggccccggcaccggcaagaccaccaccgtcacgcgcctgttg
gcgctgttgcaggctcaggcgctggcgggtgggactgacggtgcagagggcgagctggag
agcgatgagacaggccatccgcacgagcggcgggcgctggatatccgcctggtcgccccg
accggcaaggcggcggcgcgactgtcggagtcgatccgaggggcggtggcgaagctcgag
gtgccagacgcggtacgcgccgccatcccgcgcgaggcaagcaccgtgcaccgcctgctg
ggggctcgcccggattcccgccacttccgacatcacgccggcaacccgctggcgctggac
ctgctggtggtggacgaggcctcgatggtcgatctcgacctgatggccgcgctgctcggc
gcgctgcccgcccacgcccgcctgattctgctcggcgacaaggaccagctggcctcggtg
gaagccggcgccgtgctgggcgatctctgcgagcatgcgctgccgccgcgctactcaccg
gcattgtgtgccgacttgagccgcctgaccggcgaaacgctggagcaggccatcgccgtg
cctgatggccaggacttggaggaaacatcagcgacacgcggccgactcgccgatcacgtg
gtggtgctgcagaagagctatcgcttctccgccgacagtggcatcggtgccctggcacgc
gccagcaacgccggggatcgtcaggcgctgcgcgaggtctggaaggccggttatcgcgac
atcgcctggctcaagctcagtggcccggaggaccgcgatctcgagaagctggtagtcaac
ggctaccgcccggcgctggaggccgtgcgtgagcggcgtccggcgcgcgaggtgatcgac
ctgctgctcgagttccagctgctgtgcgcgctgcgccgtggcccctacggcgtcgatggc
ctcaaccagcgcgtggcgcgggtgctgatgcggcgcggcctgatcgcggacgagcgaggc
tggtacgccggtcgcccggtgatggtgacgcgcaacgaccgcgcgctggggctctacaac
ggcgatgtcggcatcaccctgccggaccccgccgccggcgggcgcctgcgcgtgttcttc
ccggtcgaggaggaggcgacgccagacaccgagcgtgatggccaggacaccgacatccag
cgcttccaccgtggcgtgcgcgcggtattgccgtcacgcctcgaggcggtggagaccgtc
ttcgcgatgacggtccacaagtcgcagggttccgagttccgtcatgtgttattcgtgttg
cctgagggcgccaatccgattctgacccgcgagctggtctacaccggcatcacgcgggcc
aagtcacgggtcacgctggcgggaacccgccgcgagacgctggaaggcgccattgaacga
cgcgtggtgagagccagcgggctggtgctctag
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