Cobetia sp. D5: U0O11_04215
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Entry
U0O11_04215 CDS
T10202
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cobd Cobetia sp. D5
Brite
KEGG Orthology (KO) [BR:
cobd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cobd03032
]
U0O11_04215 (topA)
03400 DNA repair and recombination proteins [BR:
cobd03400
]
U0O11_04215 (topA)
Enzymes [BR:
cobd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
U0O11_04215 (topA)
DNA replication proteins [BR:
cobd03032
]
Prokaryotic type
DNA Topoisomerases
U0O11_04215 (topA)
DNA repair and recombination proteins [BR:
cobd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
U0O11_04215 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
WVS99383
LinkDB
All DBs
Position
989754..992396
Genome browser
AA seq
880 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFVVKSSVGHIRDLPTSGSGKQATDPKERARQAAETR
KMSPEVKAAHKAQKAKTQLIRRMGVDPENGWEAHYEILPGKEKVVSELTRLAEKADTIYL
ATDLDREGEAIAWHLRETIGGDDSRYKRVVFNEITKKAITAAFDEPGELKMDRVHAQQAR
RYLDRVVGFMVSPLLWAKVARGLSAGRVQSVAVRLIVEREREIRAFIPEEFWDVHAELAA
ASGEAIRFELARQDGKAFRPTSEKETMDRIAALRTAKLAITNREDKPTRSKPNAPFITST
LQQAASGRLGFSVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVATARDFISEEYGSNYL
PEAANVYSSKEGAQEAHEAIRPSEVSRRATDLAGMERDAERLYELIWRQFVACQMLPAEY
LSSTLTIEVDGYELRAKGRVLKFDGYTRVMKPMGKKEEDQSLPDLAIGEKLDLVELQPLQ
HFTKPTARYTEASLVKELEKRGIGRPSTYAAIISTIQDRGYVALENRRFYAEKLGDIVTD
RLSESFKDLMDFGFTARMEDYLDEVANGGRNWRELLDTFYAEFKAELDHAQSEEGMRPNQ
PVPTDIACPTCGREMQIRTASTGVFLGCSGYNLPPKERCKTTIDLLPGDEAVAADAGEDA
ETDALRAKRRCPICATAMDSYLIDEQRKLHVCGNSPDCVGHEVEEGQFRIKGYDGPVIEC
DKCGSDMQLKTGRFGKYFGCTNENCKNTRKLLKSGEVAPPKMDPIPMPELACVKVEDHYV
LRDGASGLFLAASQFPKNRETRPPLVKELKAHADELPEKYHFILEAPDQDPDGRPAQIRF
SRKVKAQYVMTDEEGKATGWKATYDNGRWVVEDKRKGAKS
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagtcactggtgatcgtcgagtcgcccgccaaggccaagaccatcaacaagtat
ctcggcaacgacttcgtggtgaagtcgagtgtcgggcacatccgcgacctgccgaccagc
ggtagcggcaagcaggccaccgaccccaaggaacgtgcccgtcaggcggcggagactcgc
aagatgtcgcctgaggtcaaggcggctcacaaggcgcagaaggccaagacccagttgatc
cgccgcatgggggtcgacccggagaatggctgggaggcgcattacgagattctgcccggc
aaggaaaaggtcgtttccgagctgacgcgtctggccgagaaagccgacaccatctatctc
gcgacggatctggaccgcgaaggtgaggcgatcgcctggcacctgcgcgagaccatcggt
ggcgacgattcgcgttacaagcgcgtagtgttcaacgagatcaccaagaaggcgatcacg
gcggccttcgatgagccgggcgaactgaagatggaccgcgtgcatgcccagcaggcacgc
cgctatctggatcgcgtcgtcggcttcatggtttcgccgctgctgtgggccaaggtcgct
cgtggcctgtccgccggtcgcgtgcagtcggttgccgtgcgtctgatcgtcgagcgtgag
cgcgagatccgcgccttcatccccgaagagttctgggatgtccacgctgagctggccgcc
gccagtggtgaagcgatccgtttcgagctggcgcgtcaggatggcaaggccttccgtccg
accagcgagaaggagacgatggaccgcatcgcggcgctgcgcacggccaagctcgcgatc
accaatcgtgaagacaagccgacgcgctccaagccgaacgcgccgttcatcacctcgacc
ctgcagcaggcggccagtggtcgtctcggcttctcggttaagaagaccatgatgatggcc
cagcgtctctacgaggcgggttacatcacctacatgcgtaccgactcgaccaatctgtcg
gcggacgcggtggccacggcgcgcgacttcatcagcgaagaatacggcagcaactacctg
ccggaagcggccaacgtctactccagcaaggaaggcgcccaggaggctcacgaagcgatt
cgtccttccgaagtgtcgcgccgcgccaccgatctcgccggcatggagcgtgacgccgag
cgcctgtatgagctgatctggcgtcagttcgtggcctgtcagatgctgccggccgaatac
ctgtcctccacgctgaccatcgaagtggatggctacgagctgcgcgccaagggccgtgtg
ctcaagttcgacggttacacgcgtgtcatgaagccgatgggcaagaaggaagaggaccag
tcgctgccggacctcgccatcggcgagaagctggacctggtcgagctgcagccgctgcag
cacttcaccaagcccacggcgcgttacaccgaggccagtctggtcaaggagctggagaag
cgcggtatcggtcgtccatccacctatgccgccatcatctccaccatccaggaccgtggc
tacgtggcgctggaaaaccgtcgcttctacgccgagaagctgggcgatatcgtcaccgat
cgcctcagcgagtccttcaaggatctgatggacttcggcttcacggcgcgcatggaagac
tatctcgatgaggtggccaacggcggacgcaactggcgcgagctgctggacaccttctac
gccgagttcaaggccgagctggaccacgcccagtccgaagagggcatgcgtcccaaccag
ccggtgccgacggacatcgcctgcccgacctgtgggcgtgagatgcagattcgtaccgcc
tcgaccggggtcttcctgggttgttccggctacaacctgccgcccaaggagcgctgcaag
accaccatcgatctgctgccgggcgatgaagccgtggcggccgatgccggtgaagatgcc
gagacggatgcgctgcgcgccaagcgtcgctgcccgatctgcgccaccgcgatggacagc
tacctgatcgatgagcagcgcaagctgcacgtctgcggcaatagcccggactgtgtcggt
cacgaggtcgaggaaggtcagttccgtatcaagggctacgatggcccggtgatcgagtgc
gacaagtgcggttctgacatgcagctcaagaccgggcgtttcggcaagtatttcggctgc
accaacgagaattgcaagaatacccgcaagctgctcaagtccggtgaggtggcgccgccg
aagatggacccgattccgatgccggagcttgcctgcgtcaaggtcgaggaccattacgtg
ctgcgcgatggcgccagtggcctgttcctggcggccagtcagttccccaagaatcgcgag
acgcgtccgccgctggtcaaggagctcaaggcgcatgccgacgagctgccggagaagtat
cacttcattctcgaagccccggatcaggacccggacggacgtccggcgcagattcgcttc
tcgcgcaaggtcaaggctcagtacgtcatgaccgatgaggaaggcaaggcgaccggttgg
aaggcgacctacgacaacggtcgctgggtcgtcgaggacaagcgcaagggggccaagagc
tga
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