Cobetia sp. D5: U0O11_04400
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Entry
U0O11_04400 CDS
T10202
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cobd Cobetia sp. D5
Pathway
cobd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0O11_04400 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobd03019
]
U0O11_04400 (rne)
03009 Ribosome biogenesis [BR:
cobd03009
]
U0O11_04400 (rne)
Enzymes [BR:
cobd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
U0O11_04400 (rne)
Messenger RNA biogenesis [BR:
cobd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U0O11_04400 (rne)
Ribosome biogenesis [BR:
cobd03009
]
Prokaryotic type
rRNA processing factors
U0O11_04400 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
RecA_C
Motif
Other DBs
NCBI-ProteinID:
WVS99418
LinkDB
All DBs
Position
complement(1032128..1036390)
Genome browser
AA seq
1420 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRIEPSLEACFVDF
GAERHGFLPLKEISREYFSKDPGQGRPNIREVLKEGQEVIVQVDKEERGNKGAALTTFIS
LAGRFLVLMPNNPRAGGISRRIEGEERAQLKEAMNSLTLPDKMGVIVRTAGIGKSAEELQ
WDLDYLAQVWDAVTKAASSRPAPFLIYRESNVIIRAMRDYLRNDIGEVLIDSPEVQEEAL
SFVRQVMPSYQQKIKLYEDDVPLFSRFQIESQIETAYQREVKLPSGGAIVIDHTEALVSI
DINSARATRGSDIEETALQTNLEASDEIARQLRLRDIGGLVVIDFIDMTPARNQREVENR
VRDALKIDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCDGQGTIRDVRSMALS
IMRLIEEEAMKERSSQIRAILPVPVATYLLNEKRATLFDIERRQGVNVVLLPNPELDTPH
YEVVRLRDDHVDEDGADKSSFELSVETEVGKEPDPNFDKPPARTEAAVKSVSHTTPAPVA
APEAPAAAPAAVVESADSSNDSDSRNGNGKNNGNRRRNGNGSSNGRNRQESRNESRNDTR
SEGRNDSRQSSRNDNRQGNRSSQGNDTRAQASKQEVVAQSSAQTPARTAAPAAGGGLLSR
LARGFSRLLGNDSDTAVPAKSSEARKALEKARERRETVSEASAPAAARNDSRNGRNAERS
NDRNNERSNDGRGNERDDNRKDSRRRNDNASRNNDGESRNSGNDSRGNDADSNSQNDGRS
SNKRRQRNDRGNRRKSNESRQDSQQEIVTNDSKPQAEPEQTPQTDNSPKAEARSSDSQNA
KADNASKRDSGKRSDKPARGEKPAKTDKAEQVDSKQARESIKAAEQAEQVEQQVSNEDQQ
TRNNPRVRSRQHALNPQAVEEQKSLKAMTLAGPQAAAASAAATSATTAVPAIAEEGAEAV
SATTAAPQGEANAPQGKESAPQSNDSASQAETSAPQGENSTAAQDAPASAEQSASADLTA
SVAPEVSEPSNETLRETVAPESAASDAQASESEPATAEVPELVVEVPVEAPVEEASEAPV
TGAHQAQKTEQHAAQRTEQHAVQQPSVHQPQASEADDAVDTPAVTAAEVAPEAAADEQSL
KESVTSEAASPEAPAVAEEGAQALAAEEQAAEQTEAQAPVAEAEEAVAAEADTASQPAQP
VAEEPALEEAAAEQPAQEAAHEEAPQQTETSEAKVTQSADVASTEIEPAVSTERTADTVA
EAAEGSQSAEGSQSAEGSDSADGSANAEGSDAAAEGAESAVNVSASVENAPAETAFATAE
RHDNVAVAQAVSNDSHTGEVADSEHKQAPSEQDETTVAEGAQQDSTQPATETRRRRGERA
YNDPREVRRREREAAERAAAQQASAETQDTTAQDDSNTSH
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaacgcgacccagccggaagagctgcgcgtcgcactggtcgac
ggacaacgcctttacgatctcgacatcgagtccggcgcccgcgaacagaagaaagccaat
atctaccgcggcaagatcacccgcatcgagcccagcctcgaagcctgcttcgtcgacttc
ggcgccgagcgccacggcttcctgccgctcaaggaaatctcccgcgagtacttctccaag
gaccccggccagggccgtcccaacattcgtgaagtgctcaaggaaggccaggaagtcatc
gtccaggtcgacaaggaagaacgtggcaacaagggcgccgccctgaccaccttcatcagt
ctggccggccgcttcctcgtgctgatgcccaacaacccacgtgccggtggtatctcccgc
cgcatcgagggggaagagcgcgctcagctgaaggaagcgatgaacagcctgaccctgccg
gacaagatgggcgtcatcgtgcgcaccgccggcatcggcaagagcgccgaagagctgcag
tgggacctcgactacctggcccaggtgtgggacgcggtgaccaaggccgcttccagccgc
cctgcccccttcctgatctaccgtgaatccaacgtcatcatccgcgccatgcgcgactac
ctgcgcaatgacatcggcgaggtgctgatcgattctccggaagtccaggaagaagcgctg
tccttcgtgcgtcaggtgatgccgagctaccagcagaagatcaagctctacgaagacgac
gtgccgctgttctcgcgcttccagatcgaatcccagatcgagaccgcctaccagcgtgaa
gtgaagctgccctccggtggcgccatcgtcatcgaccacaccgaagccctcgtctccatc
gacatcaactccgctcgcgccacccgcggcagtgatatcgaggaaaccgcgctgcagacc
aacctggaggcctccgacgagatcgcccgccagctgcgtctgcgcgacatcggcggcctg
gtggtgatcgatttcatcgacatgacaccggcacgcaaccagcgtgaagtcgagaatcgt
gtgcgcgacgcgctcaagatcgaccgcgctcgcgtccagatcggtcgtatctcacgcttc
ggcctgatggaaatgtcgcgtcagcgtctgcgcccctcactgggcgagaccagcggcgtg
gtctgcccgcgctgtgacggccagggcaccattcgtgacgtgcgttccatggcgctctcc
atcatgcgcctgatcgaagaagaggccatgaaggagcgcagctcgcagatccgcgccatc
ctgccggtgccggtcgcgacctacctgctcaacgagaagcgcgccacgctgttcgacatc
gaacgtcgtcagggcgtgaatgtcgtgctgctgccgaacccggagctcgacacgccgcac
tacgaagtcgtgcgtctgcgtgacgaccacgtcgatgaagacggtgccgacaagtccagc
ttcgagctgtccgtcgagaccgaagtcggcaaggaaccggatccgaacttcgacaagccg
ccggcgcgtactgaagcagccgtcaagagcgtgtcccacaccacgcctgccccggttgcc
gcaccggaagcgcctgccgcagcgcccgccgccgtggtagagagcgctgacagcagcaat
gacagcgatagccgcaacggcaacggcaagaacaacggcaatcgtcgtcgcaacggcaac
ggcagcagcaacggtcgcaaccgccaggagtcgcgcaacgagtctcgtaacgacactcgc
agcgaaggccgcaacgacagccgtcagagctcgcgcaatgacaaccgtcagggcaaccgt
tcgagccagggcaatgacacccgcgctcaggccagcaagcaggaagtcgtggcgcagtcg
tcagcccagactcccgccaggactgccgctccggccgccggtggcggcctgctgtcgcgt
ctggcccgaggcttcagccgcctgctgggcaatgacagcgacaccgccgtgccggccaag
tccagcgaagcccgcaaggcactggaaaaggcccgcgagcgtcgcgagaccgtcagtgaa
gccagcgctccagcagcggctcgcaacgactcccgcaatggccgcaacgctgaacgtagc
aacgaccgcaacaacgaacgtagcaacgacggccgtggcaacgagcgtgatgacaaccgc
aaggactcccgtcgtcgcaatgacaacgcgtcacgcaacaacgacggcgagtcacgcaac
agcggcaacgattcccgcggcaacgacgctgacagcaacagccagaacgatggccgcagc
agcaacaagcgccgtcagcgcaacgaccgtggcaaccgtcgcaagtccaacgagtcgcgt
caggacagccagcaggaaatcgtcaccaacgacagcaagccgcaggctgaaccggagcag
acgccgcagactgacaacagcccgaaagccgaagccaggagcagcgacagccagaacgcc
aaggccgacaacgccagcaagcgcgattccggcaagcgcagcgacaagccggcgcgtggt
gaaaagccggccaagactgacaaggccgagcaggtcgacagcaagcaggcacgcgagtcc
atcaaggcagccgaacaggccgagcaggtggaacagcaggtcagcaacgaagaccagcag
acccgcaacaacccgcgtgttcgcagccgtcagcatgctctgaacccgcaggcggtcgaa
gagcagaagtcgctcaaggccatgacgctggcaggcccgcaggcagccgctgcttcggca
gccgccacttcggcaaccactgcggtaccggccattgccgaggaaggtgccgaagccgtc
agcgccactaccgctgccccgcaaggcgaagccaatgccccgcaaggcaaggaaagcgcc
ccgcaaagcaacgacagcgcctcgcaggctgaaaccagcgccccgcagggtgaaaacagc
accgcggcacaggacgcaccggccagcgccgagcagtctgccagcgcagacctcacggct
tccgttgcaccggaagtcagcgagccgagcaacgagacgctgagagagacggtagcccct
gagtcagcggcatccgatgcgcaagcgtctgagtctgagccagcgacagcggaagtgccc
gagctggtcgtcgaagtacctgtcgaagcaccagtcgaagaggcgtccgaagcgcctgtc
actggcgctcaccaggcgcagaagactgagcaacacgccgcccagcgcactgagcagcac
gccgtccagcagccaagcgtgcaccagccgcaggccagcgaagctgacgacgccgtcgac
acgccggccgtcaccgcggcagaagtcgcgccggaagccgcggccgatgagcagtcgctg
aaggaaagcgtgaccagcgaagccgcttcgcctgaagcgccagccgtcgccgaggaaggc
gcccaggcactggccgccgaagagcaagctgccgagcagaccgaagctcaggcacctgtc
gctgaagcagaggaagcggtcgccgctgaagccgacactgccagccagcctgcgcagcct
gtggcggaagaacctgccttggaagaagcagccgctgaacagccagcacaggaggccgcg
cacgaagaggctccccagcagactgagaccagcgaggcgaaggtgacgcaaagcgctgac
gtggccagcactgagattgagcctgccgtcagcactgagcgcaccgcagatactgtcgct
gaagctgctgaaggctctcaatcagctgaaggctctcaatcagctgagggctctgattct
gctgacggctctgcaaacgctgaaggctctgatgctgctgctgaaggtgccgaaagcgcc
gtcaacgtcagcgccagcgtcgagaatgcgccggccgagacagcgttcgcgactgccgag
cgtcacgacaatgtcgccgtggcgcaagccgtgagcaacgactcccacactggggaagtt
gctgacagcgagcacaagcaggcgccgagcgagcaagacgagacgacagtggcagaaggc
gcgcagcaggacagcacgcagccagccaccgaaacccgccgtcgccgtggcgaacgcgcc
tacaacgatccgcgcgaagtgcgtcgtcgtgagcgtgaagctgccgaacgtgctgctgca
caacaggccagcgcagagactcaggacacgaccgctcaggatgacagcaacacgtctcac
tga
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