Cobetia sp. D5: U0O11_04495
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Entry
U0O11_04495 CDS
T10202
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cobd Cobetia sp. D5
Pathway
cobd03420
Nucleotide excision repair
cobd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cobd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
U0O11_04495
03430 Mismatch repair
U0O11_04495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobd03400
]
U0O11_04495
Enzymes [BR:
cobd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U0O11_04495
DNA repair and recombination proteins [BR:
cobd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
U0O11_04495
MMR (mismatch excision repair)
Other MMR factors
U0O11_04495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
WVS99437
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All DBs
Position
1053217..1055736
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AA seq
839 aa
AA seq
DB search
MSSPLPPIEPDSTATSGPDVAASPLALAVDQLTQRLTDQQRAVVAHRGRHARVAAVAGSG
KTTTLVARVLSLLAEGIAAQRILVLMFNRSAREDFVAKLAQSAPPGTRLPDIRTFHSIGH
RLTTTLVRWGSLEPRELIQQDWALERLLKQAAQRALGDADRADREAALEGERLEALAQFC
DLVKAEMCEPTLLYERMNLGEHTGHFVESFAQLEQLLEQYGQMTYADLLYRPLRQLEKEP
ETRARIQGHLQHVIIDEYQDINEAQQRMLALLAGAPSGGESSPAASSAMAEVMAVGDANQ
CIYEWRGARPDYMLTRFAESFAAPLDFPLSYTFRHGHRLALAANHAIAANARRPDQLCLA
APGTPATRLFEGQGAASLVAALTAWRESGRSGAEAAVLVRSWALSVPVQLQLLKAGIPFR
LGQGDRFVFRLPLVQALAGYLELARDATRLRDPAHLLLLFTQPTAFVARERLERLCQQLA
DSQRWPRKEDPILEGLKPLQRRNLHKRWKLLCDLPSLGDWAPARLLRHVVDELEADKVLR
RAAARRDKGEEDVRLLDVLIEQAGELANDPDAFINLLRNPVEDAADGVLITTVHGAKGLE
WPLVGLWGMNEEDFPAYSRDNPLSPERLEEERRLCYVGVTRAREQLHLWRDGGTHTPSRF
LAELCVEDCTRLGDWIHGAGKRAKLARLQAEDGDEASRESADGSDERLRVAAPALGEAYL
ARLPLARHGITPPTLEALPKKVAKSPGKPASKSTAQGQSSSGGTYARGARQGNRSPRGEP
AVLRRVGDWEVGQRLRHESFGEGVIEEVSGNEANPLIEVRFADGNKRRLIATRAPLTAL
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaccacttcctcccatcgagcccgacagcaccgcaacctccgggccagacgtt
gcagcatcgccactggcgctggccgtcgatcagctgacgcaacggctgacggatcagcag
cgcgccgtggtggcgcatcgtgggaggcatgcgcgggtagcggcggtggcgggctccggc
aagaccaccacgctggtggcgcgggtgctgagcctgctggcggaaggcattgcggctcag
cggattctggtgctgatgttcaaccgttcggcgcgcgaggacttcgtcgccaagctggcg
cagtcggccccgccgggcacacggctacccgacattcgcaccttccactccatcggccat
cgcctgactaccaccctggtgcgctggggcagcctcgagccgcgcgaactcatccagcag
gactgggcgttggagcgtctgctcaagcaggccgcccagcgtgcgctgggcgatgccgat
cgcgccgatcgtgaggcagcgctcgagggcgagcgtctcgaagcgctcgcccagttctgt
gatctggtcaaggccgagatgtgcgagccgacgctgctgtatgagcgcatgaatctcggc
gagcacaccggccacttcgtcgagtccttcgctcagctggagcagctgctcgagcagtac
ggccagatgacctatgccgatctgctctaccggccgctgcgtcagctggagaaggagccc
gagactcgtgcgcgcatccaggggcatctgcagcacgtcatcatcgatgagtatcaggac
atcaatgaggcgcagcagcgcatgctggcgctgctggcgggtgcgccgtccggcggcgag
tcgtcgcccgcagcctccagcgccatggcagaagtcatggccgtgggcgatgccaaccag
tgcatctacgagtggcgtggcgcgcggcctgactacatgctgacgcgctttgccgagagc
ttcgccgcgccgctggatttcccgctcagttacacctttcgccacggtcatcgtctggcg
ctggcggccaatcacgccatcgccgccaatgcgcgccgcccggaccagctgtgtctggcc
gcgcccggcacgccggcgacgcgtttgttcgaaggccagggcgccgccagtctggtcgcg
gcgctcacggcctggcgagagtcgggtcgcagtggcgccgaggccgccgtgctggtgcgc
agttgggcgctgtcggtaccggtgcagttgcagctgctcaaggccggcattcccttccgg
ctggggcagggggatcgcttcgtgttccgtctgccgctggtgcaggcgctggcgggctat
ctggagctggcgcgtgatgccacgcgtctgcgcgacccggcgcacctgctgctgctgttc
acccagcccaccgccttcgtcgcgcgcgagcgcctcgagcgcctgtgtcagcaactagcc
gacagccagcgctggccacgcaaggaagaccctatcctcgaggggctcaagccgctgcaa
cgccgcaacctgcacaagcgctggaagctgttgtgtgatctgccctcgctgggcgattgg
gcgcccgcgcggctgctgcgtcatgtggtcgatgagctggaggccgacaaggtgctgcgc
cgcgccgcggcccggcgtgacaagggcgaggaggatgtgcgcctgctggatgtgctgatc
gagcaggcaggggaactggccaatgaccccgacgccttcatcaatctgctgcgcaatccg
gtcgaggacgccgccgacggcgtgctgatcaccacggtgcacggggccaaggggctggag
tggccgctggtggggctgtggggcatgaacgaggaagacttcccggcctactcgcgtgac
aacccgctgtcgccggagcgcctcgaggaggagcgacgcctgtgctatgtcggcgtgacg
cgtgcccgcgagcagctgcacctgtggcgtgacggcggcacgcatacgccaagccgcttc
ctggccgagctgtgcgtggaggactgcacccgcctcggcgactggattcacggtgccggc
aagcgcgccaagctcgcccgtctgcaggccgaggacggcgatgaggcctcccgcgagtca
gcggacggaagcgacgagcgcctgcgtgtggcggcgccggcacttggcgaggcctatctg
gcgcggctgcctctggcacgtcacggcatcacgccgccgacgctggaagcgctgccgaag
aaggtcgccaagtccccgggcaagccggccagcaagtcgactgcgcaaggccagtccagc
tcgggcggcacctatgctcgcggcgctcgacagggcaatcgctctccacgcggcgagccg
gccgtgctgcgacgcgtcggtgattgggaggtcggtcagcgcttgcgtcacgagagcttc
ggtgagggggtgatcgaagaggtctccggcaatgaggccaatccgctgatcgaggtgcgc
ttcgccgatggcaacaagcgccgcctgatcgccacgcgtgccccgctgacagccttgtga
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