Cobetia sp. D5: U0O11_04565
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Entry
U0O11_04565 CDS
T10202
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
cobd Cobetia sp. D5
Pathway
cobd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0O11_04565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobd03019
]
U0O11_04565
Enzymes [BR:
cobd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U0O11_04565
Messenger RNA biogenesis [BR:
cobd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U0O11_04565
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_C_4
Motif
Other DBs
NCBI-ProteinID:
WVS99451
LinkDB
All DBs
Position
1070426..1071730
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AA seq
434 aa
AA seq
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MSETDQTQPAAEQTQQEPQDPNQKPRKPKRRRRKPRRSQSKWNLDQFPVAPVAGQWRFHD
FDLPLPLMRAIQKAGFEYCTPIQAQTFEKALLGGDVVGRAQTGSGKTAAFLIATLAYFLE
EKAPEGQKPGAPRAVIIAPTRELALQIEKDAKAFSEFARISVACVVGGMDYQKQRERLER
KVDLLVATPGRLLDFHTKRDVDLSETEVLVVDEADRMLSMGFIPDVKRIIRATPRPEERQ
TLLFSAELSSDVLGLAEQWTHEATQVAVEHEATAAIAADNDAVQTYTVSDDDKLRLLINL
VKQGEMERSVVFGNSRGLVRKINAALKEAGIESAVMSGAETQTERLEAHEAFRNGKLKVL
VVSDVAGRGFALEDATHAINFTLPEVPEDYVHRASFSDVTLISFVGEEDVFSLPEIEDYL
QETLPRQQPPQGLL
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagacggatcagacccagccagccgctgagcagactcagcaagagccgcaggac
ccgaaccagaagccgagaaagcccaagcgtcgtcgtcgcaagccgcgccgctcccagtcc
aagtggaacctcgatcagttcccggtcgcgccggtcgccggtcagtggcgcttccatgat
ttcgatctgccgctgccactgatgcgtgccatccagaaggccggcttcgaatactgcacc
ccgatccaggcccagaccttcgagaaggcactgctgggtggtgacgtggtcggtcgtgcc
cagaccggcagcggcaagaccgccgccttcctgatcgccaccctggcctacttcctggaa
gagaaggcgccggaaggtcagaagccgggcgcgccgcgtgccgtcatcatcgcgccgacc
cgtgagcttgcgctgcagatcgagaaggacgccaaggcgttctccgaattcgcgcgcatc
tcggtggcctgcgtggtgggcggcatggactaccagaagcagcgtgaacgcctcgagcgc
aaggtcgacctgctggtcgcaacgccaggccgcctgctcgatttccacaccaagcgcgat
gtcgatctctccgagaccgaggtgctggtggtcgacgaagcggaccgcatgctgtcgatg
ggcttcattcccgacgtcaagcgcatcatccgcgccacaccgcgtcccgaagagcgccag
acgctgctgttctccgccgagctgtcttccgacgtgctggggctggccgagcagtggacg
catgaggcgactcaggtcgcggtcgagcacgaagcgacggctgccatcgcggcggacaac
gacgccgtgcagacctacaccgtgagcgatgatgacaagctgcgtctgttgatcaatctg
gtgaagcagggcgagatggagcgctccgtggtcttcggtaacagccgtgggctggtgcgc
aagatcaacgccgcgctcaaggaagccggtatcgagtcggcggtgatgtccggcgccgag
acccagaccgagcgcctggaagcccatgaggccttccgcaacggcaaactcaaggtgctg
gtggtcagcgatgtcgccgggcgtggcttcgcactcgaagacgcgacccatgcgatcaac
ttcacgctgccggaagtgccggaagactatgtccaccgtgcaagcttcagcgatgtgacc
ttgatcagcttcgtcggtgaggaagatgtcttctcactgccggaaatcgaagactacctg
caggaaacgctgccgcgtcagcagccgccccagggcctgctgtaa
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