Cobetia sp. D5: U0O11_05990
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Entry
U0O11_05990 CDS
T10202
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cobd Cobetia sp. D5
Pathway
cobd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0O11_05990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobd03019
]
U0O11_05990
Enzymes [BR:
cobd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U0O11_05990
Messenger RNA biogenesis [BR:
cobd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U0O11_05990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WVS99721
LinkDB
All DBs
Position
complement(1415052..1416263)
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AA seq
403 aa
AA seq
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MPFSALGLSDSIVKAVTEQGYQTPTPIQEKAIPVVLAGDNLIAAAQTGTGKTASFVLPIL
QTLQQAPKVRAKRVHAVILTPTRELAIQVEDNIQHYARYLEVSSMAMYGGVEIEPQQQRL
IEGVDILVATPGRLLDMLTRRAIHLDETRTLVIDEADRMLDMGFIADINKIVEKLPRERQ
NLLFSATLSAQVRVLAKTAVTDAVEIMVAPENVTAPDISQYLITVDKEFKSALLSHLIHE
KQWQQALIFIETKRGAAKLVSQLEKRDIAAESFHSGRSQAMREQLLADFKAGTIKYLVAT
GVAARGIDIDDLQRVVNYDLPDAAEDYVHRIGRTGRAGASGEAISLVSRDDFRNLCAIEQ
HLGYFVTREVVEGFAPKLAVPASNSDYAPKSASKSRRRQSNRR
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgccattttctgcccttggtttgagcgattccatcgtcaaggccgtcaccgagcaaggc
taccagaccccgactcccatccaggagaaggcgatccccgtcgtgctggccggtgacaac
ctgatcgccgccgcccagacgggtaccggcaagacggcaagcttcgtgctgcccatcctg
cagaccctgcagcaggcgcccaaggtgcgcgccaagcgcgtacatgccgtcatcctgacg
ccgacgcgggagctggcgatccaggtcgaagacaacatccagcactacgccaggtatctg
gaagtcagctccatggcgatgtatggcggcgtggagatcgaaccgcagcaacagcgtctg
atcgagggcgtggacatcctggtggcgacgcctggccgcctgctggacatgctgacccgc
cgcgcgatccatctcgacgagacacgcaccctcgtcatcgacgaagcggaccgcatgctc
gacatgggcttcatcgccgacatcaacaagatcgtcgagaagctgcccagagagcgccag
aacctgctgttctcggccacgctctcggcccaggtgcgcgtactcgccaagaccgcagtg
acggacgccgtcgagatcatggtcgcaccggagaacgtcaccgcgccggatatcagccag
tatctgatcacggtcgacaaggagttcaagtccgcccttctgagccatctgattcacgag
aagcagtggcagcaggcgctgatcttcatcgagaccaagcgcggcgccgccaagctggtg
agtcagctggagaagcgtgacatcgctgccgagtccttccacagcggtcgcagccaggca
atgcgcgagcagctgctggccgacttcaaggccggcaccatcaagtatctcgtggccacc
ggcgttgccgcgcggggcatcgacatcgatgacctgcagcgcgtggtcaactacgacctg
ccggacgccgccgaggattatgtccaccgcatcgggcgtaccggccgtgccggggccagc
ggtgaagccatctcgctggtctcgcgtgatgacttccgcaacctgtgcgccatcgagcag
cacctgggctatttcgtgacacgcgaagtcgtggaaggctttgcgcccaagctcgcggtg
ccggcctcgaacagcgactacgcccccaagtccgcaagcaagagccgtcgtcgccagtcc
aaccgccgctga
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