Cobetia sp. D5: U0O11_06215
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Entry
U0O11_06215 CDS
T10202
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
cobd Cobetia sp. D5
Brite
KEGG Orthology (KO) [BR:
cobd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cobd03000
]
U0O11_06215
Transcription factors [BR:
cobd03000
]
Prokaryotic type
Helix-turn-helix
Other families
U0O11_06215
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
HTH_23
HTH_Tnp_ISL3
HTH_50
HTH_22
AAA
HTH_17
HTH_30
HTH_7
HTH_29
AAA_16
AAA_5
Mg_chelatase
HTH_28
HTH_AsnC-type
HTH_AraC
HTH_IclR
RWP-RK
TrmB
HTH_11
AAA_2
Sigma70_r4
TetR_N
AAA_22
HTH_24
HTH_3
HTH_38
Sigma70_r4_2
HTH_5
IclR_C
AAA_7
HTH_20
HTH_21
Motif
Other DBs
NCBI-ProteinID:
WVS99763
LinkDB
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Position
complement(1466368..1468419)
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AA seq
683 aa
AA seq
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MIRQLDTMPPDKRQHIQTLMQLGEGRDVFPETQRDVIQRSWQRCLEEYQLDPSRPRPVRV
LTQQALRDHQESADELLHVARAGVERLYSQIAEHGYALILTDQRGIAVDFRGQRDQLSEL
RRAGLYLGSDWNERYAGTSAAGTCLHDGAAVTCHQREHFDATHIDLTCTAAPITDPQGRV
IAALDISALKSPRPQESQTFALSLVTLHARMIEDAYFLHRYRDCLILRFDTAREFVHLNG
RGLFAIQEDGKVIAANHEGRRLIDAHLARWPPWTVSTLPAVTQLFDGELNELLSIPHANL
DQIRAFRLRADDAIVFVTLIEPRGYPVRPLPTVSQQDDPVPELDQLAGDDPSMHRLLKLA
RRMRHENVSILIRGETGTGKEVLARALHDSGPRAKAPFVAVNCAAIPESLIESELFGYLP
GAFTGGRPKGMRGLIQQADGGTLFLDEIGDMPLPLQSRLLRVLAEREVSPLGAETPIKVD
IRVITATHRDVTELIASGQFREDLYYRLNGAELLLPALRKRADRHYLIRKLHAELQAERD
QTLHLRADAISALLSHHWPGNIRQLRNAIAFAMATVEGDEITLHDLPEVCQANNGSARGT
TSPLAAASPFASGASSPPASPAFASTGADAGTDAYASELLDLLRHTDWNISQVARQLGVS
RPTIYRRMRRHGLVAPNHQPLAS
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgatccgccaactcgacacgatgccgcccgacaagcggcagcatatccagaccctgatg
caactgggcgaaggccgcgacgtcttccctgagactcagcgcgatgtcatccagcgctcg
tggcagcgctgtctggaggagtaccagctcgaccccagccgccctcgcccggtccgcgtt
cttacccagcaggcgctgcgtgatcatcaggaatcggcggatgagctgctacacgtggcg
cgtgccggtgtcgagcggctctatagtcagatcgcagaacatggctatgcgttgatcctc
accgatcaacgcggcatcgcggtggattttcggggtcaacgtgatcagttgagtgagctg
cggcgcgccggcctctatctcggctcggactggaacgagcgctatgccggcacctcggcg
gcgggcacctgtctgcacgatggcgcagccgtcacctgccaccagcgtgagcacttcgat
gctacccacatcgacctgacctgcaccgcggcccccatcaccgatccccagggccgtgtg
atcgcggccctcgatatctcggcgctgaaatcgccccgcccgcaggaaagtcagaccttt
gcactttccttggtcaccctgcatgcccgcatgatcgaggatgcctacttcctgcatcgc
tatcgggattgcctgatcctgcgcttcgatacggcgcgggaattcgtgcacctgaatggt
cgtggtctatttgccattcaggaagatggcaaggtgatcgccgccaaccacgaaggccgg
cgcctgatcgatgcgcatctggcgcgctggccaccgtggacggtctctaccctgcccgcc
gtcacgcaactgttcgatggggagctcaatgagctgttgagcattccgcacgccaacctg
gatcagatccgcgccttccgcctgcgggcagatgacgccatcgtcttcgtaacgctgatc
gagccacgcggctatccggtgcggcccctccccaccgtcagtcagcaggatgacccggtg
cccgagctggaccagctcgcgggagacgacccatccatgcatcggctgctcaagctggcg
cgccgcatgcgccatgagaatgtgagcatcctgattcgtggcgagacgggtaccggcaag
gaagtcttggcgcgggcgctgcatgacagcgggccacgcgccaaagcccccttcgtggcg
gtgaactgcgccgccattccggaatcgctgattgaaagtgagctcttcggctatctgccg
ggtgccttcacgggaggaagacccaagggcatgcgcggcctgatccaacaagccgacggt
ggcacgctgttcctggatgagatcggcgatatgccattgccgctccagtcacgcctgttg
cgcgtactcgccgagcgggaggtgtcacccctgggggctgagacgcccatcaaggtggat
attcgcgtcatcactgccacgcatcgtgatgtcacggagctgatcgccagcgggcaattc
cgcgaagacctctactaccgactcaacggcgccgaactcctgctacccgcgctgcgtaag
cgcgccgaccgccattacctcattcgcaagctgcatgcggaactgcaggccgaacgcgac
cagacactccacctgcgcgctgacgccatcagtgcgctgttgagtcatcactggccgggc
aacatacgccaactgcgcaatgcaattgccttcgcgatggccaccgtggagggcgatgaa
atcaccctgcatgacctgccggaggtctgccaggccaacaacggcagcgcccgcgggaca
accagtccgcttgccgctgcctccccctttgcatccggcgcttcctcgccccctgcctct
ccagcgttcgcgtctacaggggctgatgcagggactgatgcgtacgccagcgaattgctc
gatctattgcgccacacggattggaacatcagccaggtcgcccgccaactcggcgtctcg
cggcccactatctaccgccgcatgcgccgccacggcctggtggcacccaatcatcagccg
ctcgcctcatga
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