Cobetia sp. D5: U0O11_10710
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Entry
U0O11_10710 CDS
T10202
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
cobd Cobetia sp. D5
Pathway
cobd00521
Streptomycin biosynthesis
cobd00523
Polyketide sugar unit biosynthesis
cobd00525
Acarbose and validamycin biosynthesis
cobd00541
Biosynthesis of various nucleotide sugars
cobd01100
Metabolic pathways
cobd01110
Biosynthesis of secondary metabolites
cobd01250
Biosynthesis of nucleotide sugars
Module
cobd_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
cobd00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
U0O11_10710 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
U0O11_10710 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
U0O11_10710 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
U0O11_10710 (rfbB)
00525 Acarbose and validamycin biosynthesis
U0O11_10710 (rfbB)
Enzymes [BR:
cobd01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
U0O11_10710 (rfbB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
Polysacc_synt_2
RmlD_sub_bind
NAD_binding_4
adh_short
NAD_binding_10
KR
Sacchrp_dh_NADP
TP0260_1st
NmrA
Motif
Other DBs
NCBI-ProteinID:
WVS97367
LinkDB
All DBs
Position
complement(2560195..2561274)
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AA seq
359 aa
AA seq
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MSKTFLITGGAGFIGSAVVRELIRSTQHTVINLDALTYAGNLESLADVTDSERYHFVQAD
ICDGEKMKAVFAEFQPDIVMHLAAESHVDRSIDGPADFIETNIVGTYQLLEAARQYWKGL
KESDAEKAAGFRFHHISTDEVYGDLEGPEDLFTETTPYAPSSPYSASKASSDHLVRAWQR
TYGLPTLVTNCSNNYGPYHFPEKLIPLMILNALAGKALPVYGDGKQVRDWLYVEDHARAL
IKVATEGNIAEAYNIGGHNEKQNIEVVKTLCALLEELVPEKPAGIAKYEDLISYVTDRPG
HDVRYAIDAAKIERELGWVPQETFETGLRKTVEWYLANESWWQRVQDGSYRGERLGTGS
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacatttcttatcaccggtggtgccggcttcatcggctccgcggtcgtccgt
gagctgattcgctccactcaacataccgtcatcaatctggatgcgctgacctacgccggt
aacctcgaatccctggcggatgtcacggattccgagcgctatcacttcgtgcaggctgat
atctgcgatggcgagaagatgaaagctgtcttcgcggaattccagccggatatcgtgatg
cacctggcggccgagagccacgtggatcgctccatcgatggcccggcggatttcatcgag
acgaacatcgttggtacctatcagctgctggaagcggcgcgtcagtattggaagggcttg
aaggagtctgatgccgagaaagccgctggcttccgcttccatcacatctccaccgatgag
gtatatggcgatctggaagggccggaagatctctttaccgagacgacaccgtatgcgccg
agttcaccgtactctgccagcaaagcgagttcggatcacctcgtgcgtgcctggcagcgt
acctatggcctgccgacattggtgaccaactgctccaacaattatggcccttaccacttc
cccgagaagctcatcccgctgatgatcctgaatgctctggcgggcaaggcgctgccggtg
tatggcgatggcaagcaggtacgtgactggctgtacgtggaagaccatgcccgtgcgctg
atcaaggttgccaccgaagggaatatcgccgaggcgtataacattggcggccataacgag
aaacagaacatcgaagtcgtcaagacactctgtgctctgctggaagagctggtccccgag
aagcccgcgggcattgccaagtacgaagacctgatcagttacgtgacggatcgccccggt
cacgatgtgcgctatgccatcgatgccgccaagatcgaacgcgagctgggctgggtgccg
caggaaaccttcgagacaggcctgcgcaagacggtcgagtggtatctggccaatgagagc
tggtggcagcgcgtgcaggatggcagctaccgcggtgaacgtctgggtaccgggagctga
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