Cobetia sp. D5: U0O11_13120
Help
Entry
U0O11_13120 CDS
T10202
Symbol
glyA
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
cobd Cobetia sp. D5
Pathway
cobd00260
Glycine, serine and threonine metabolism
cobd00460
Cyanoamino acid metabolism
cobd00630
Glyoxylate and dicarboxylate metabolism
cobd00670
One carbon pool by folate
cobd00680
Methane metabolism
cobd01100
Metabolic pathways
cobd01110
Biosynthesis of secondary metabolites
cobd01120
Microbial metabolism in diverse environments
cobd01200
Carbon metabolism
cobd01230
Biosynthesis of amino acids
cobd01240
Biosynthesis of cofactors
cobd04981
Folate transport and metabolism
Module
cobd_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
cobd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
U0O11_13120 (glyA)
09102 Energy metabolism
00680 Methane metabolism
U0O11_13120 (glyA)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
U0O11_13120 (glyA)
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
U0O11_13120 (glyA)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
U0O11_13120 (glyA)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
U0O11_13120 (glyA)
Enzymes [BR:
cobd01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
U0O11_13120 (glyA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
DUF3863
Motif
Other DBs
NCBI-ProteinID:
WVS97809
LinkDB
All DBs
Position
complement(3142869..3144131)
Genome browser
AA seq
420 aa
AA seq
DB search
MFTRDMQIAGFDDALLSAMDDEVVRQEAHIELIASENYASPRVIQAQGSQLTNKYAEGYP
GKRYYGGCEFVDKVEQLAIDRACELFGATYANVQPHAGSQANSAVFQALVSPGDTILGMS
LDAGGHLTHGARPNFSGKHYNAVQYGLGENGLIDYAEVARLAREHKPKMIIAGFSAYSQI
IDWAEFRKIADEVGAYLLVDMAHVAGLVAAGVYPSPLPHAHVVTTTTHKTLRGPRGGLIL
SAEGNADIEKKLNSAVFPGGQGGPLMHVIAAKAVCFKEAMDPAFTTYQKQVVKNAKAMAS
VFLERGFEVVSGGTEDHLFLLSLVKQGLTGKDADAALGRAHITVNKNAVPGDPQSPFVTS
GLRIGTPAVTTRGFQEQECLELAGWICDILDAMVAGDSAAAEAEVQAKVSAVCARLPVYA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgttcacccgtgacatgcagattgccggttttgatgatgcgctcctgagcgccatggac
gacgaagtcgttcgccaggaagctcacatcgagctgatcgcctccgagaactacgccagc
ccccgcgtcatccaggcgcaaggctcccagctgaccaacaagtacgcggaaggctacccg
ggcaagcgttactacggcggttgcgagttcgtcgacaaggtcgagcagctggccatcgat
cgtgcctgcgaactgttcggtgccacctacgccaacgttcagccgcacgccggttcccag
gccaacagtgccgtcttccaggcgctggtctcgccgggtgacaccattctgggcatgagc
ctggacgcggggggtcacctgactcacggtgcacgtccgaacttctccggcaagcactac
aacgccgtgcagtacggtctgggcgagaacggcctgatcgactacgccgaagtcgcgcgt
ctggcgcgtgagcacaagccgaagatgatcatcgccggcttctccgcttactcccagatc
atcgactgggccgagttccgcaagatcgccgacgaagtgggtgcctacctgctggtcgat
atggcccacgtggccggtctggtcgccgctggcgtctacccgagcccgctgccccacgcc
cacgtcgtcaccaccaccacgcacaagaccctgcgcggtccgcgtggcggcctgatcctg
tccgccgaaggcaatgccgacatcgagaagaagctgaactccgctgtcttcccgggcggc
cagggtggtccgctgatgcacgtcatcgcggccaaggcggtctgcttcaaggaagcgatg
gacccggccttcaccacttaccagaagcaagtggtcaagaacgccaaggcgatggcgtcc
gtgttcctggagcgcggcttcgaagtcgtctccggcggcaccgaagaccacctgttcctg
ctgtctctggtcaagcagggcctgaccggcaaggacgctgacgctgcgctgggccgtgcc
cacatcaccgtcaacaagaacgccgtaccgggtgacccgcagtcgccgttcgtcacctcc
ggtctgcgtatcggtaccccggccgtcaccacgcgtggcttccaggagcaggagtgtttg
gaactggccggctggatctgcgatatcctcgatgcgatggtcgccggcgattccgccgct
gccgaagccgaggtgcaggccaaggtctccgccgtctgtgcacgtctgccggtctacgcc
tga
DBGET
integrated database retrieval system