Cobetia sp. D5: U0O11_15705
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Entry
U0O11_15705 CDS
T10202
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cobd Cobetia sp. D5
Pathway
cobd03030
DNA replication
cobd03430
Mismatch repair
cobd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cobd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U0O11_15705 (dnaE)
03430 Mismatch repair
U0O11_15705 (dnaE)
03440 Homologous recombination
U0O11_15705 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cobd03032
]
U0O11_15705 (dnaE)
03400 DNA repair and recombination proteins [BR:
cobd03400
]
U0O11_15705 (dnaE)
Enzymes [BR:
cobd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
U0O11_15705 (dnaE)
DNA replication proteins [BR:
cobd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
U0O11_15705 (dnaE)
DNA repair and recombination proteins [BR:
cobd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
U0O11_15705 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WVS98274
LinkDB
All DBs
Position
complement(3798788..3802288)
Genome browser
AA seq
1166 aa
AA seq
DB search
MTTPFVHLRVHTEFSLVDGLPGVKPLIKATAAAGQPAVAVTDEANLFGLVKFYSNARAAG
IKPIIGADMWLINPQDATRPYRLTLLAMNDTGYRNLTELISRGWTDGQKQDRAYLEKQWI
FEQAEGLIVLSGGREGEIGRHLLSDHEDSARALLGEWKAVFGDRFYLELTRTQRQYEEEC
LHLSVALAEATDTPVVATNDVRFLKREDYWAHETRVSIGEGKALDDPRRETRYSDEQYLK
SAEEMSELFSDIPEALENSVLIAARCSVTVQLGTYFLPEFPVPEGMTMDQFFRKVSHDGL
TERLDKLYPHARHPRDSEAWAEIEQRYRTRLDFELDIILQMGFPGYFLIVMDFIQWGKDN
GVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEKRDRV
IDYVAERYGRNAVSQIVTFGTMAAKAVVRDVARAQGKPYSLGDKLSKLIPFEVGITLEKA
IEQEPQLKEFIDNDEEAQEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFAPLLCDEDG
SGLVVQFDKNDVEEAGLVKFDFLGLRTLTIIDWATEMVDKIREREGLAPLDIDDIPLDDA
KTFDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALFRPGPLQSGMVDDFINR
KHGRSEVSYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGQADMLRRAMGK
KKPEEMAKQRAGFMEGCAGKGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTGWL
KAHYPGPFMAAVISTEMQTIEKVVPLIEECRHIGLTVTPPDVNIGGYKFTVDLEGRVVYG
LGAIRGVGEGPIDAIVSARAEGGPFSDIFDFCKRIDAKKINKRTLEALIRSGALDNIGPS
RAVLMLAVEDALKAASQNHANNDVGITDMFGDAFSEPETDVYAGYRKAREWTDKERLTGE
KDTLGLYLTGHPIDEYEGELKRFINARISDLKPSREPQRIAGLVIAMRTMKSKRGDTMAF
VTLDDRTGRIEASMFGELYDQVRNKLVPDSVVIVEGEVSQDDYSGGLRLRGKDVTPIIDA
RARFGEAVEMSIAAEDIGGRFTQQLTTLLTPHLASEGLPMRLRYRNAAAEAWLELGEQWR
VAPSDELLIQLGEVEGQRGVRLKYRE
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgccctttgttcacctgcgcgttcacaccgagttctccctcgtcgatggtctg
cccggcgtcaagccgctgatcaaggcgaccgccgcggcgggccagccggctgtcgcggtg
actgacgaggccaacctgttcgggctggtcaagttctactccaatgcgcgcgctgctggc
atcaagccgatcatcggtgccgacatgtggctgatcaatccccaggatgccacacgcccg
tatcgcctcacgctgctggcgatgaacgacaccggctatcgcaacctcaccgagctgatc
tcgcgcggctggaccgatggccagaagcaggaccgcgcctacctcgagaaacagtggatc
ttcgagcaggccgagggcctgatcgtgctgtccggtggccgtgaaggcgagatcggccgt
catctgctgtcggaccacgaagacagcgcccgggcactgctcggtgagtggaaggcggtg
ttcggggatcgcttctatctggagctgacccgcacccagcgtcagtacgaggaagagtgc
ctgcacctgtcggtggcgctggccgaggccaccgatacgccggtggtcgccaccaatgat
gtgcgcttcctcaagcgggaggactactgggcccacgagacgcgcgtctccatcggcgaa
ggcaaggcgctggatgacccgcggcgcgagacccgctacagcgatgagcagtacctgaag
agcgccgaggagatgagcgagctgttctccgacattcccgaagcgctcgagaacagtgtg
ctgatcgcggcgcgctgctcggtgaccgtgcagctgggcacctacttcctgcccgagttc
ccggtgccggaaggcatgacgatggaccagttcttccgcaaggtctcgcatgatggcctg
acggagcgcctcgacaagctgtatccccacgccaggcatccgcgcgacagcgaggcctgg
gccgagatcgagcagcgctatcgcacgcggctggatttcgagctcgacatcatcctgcag
atgggcttccccggttacttcctgatcgtcatggacttcatccagtggggcaaggacaac
ggcgtgccggtcggcccggggcgtggttccggtgccggctcgctggtggcctacgcccag
aagatcaccgatctggacccgctggaatatgacctgctgttcgagcgcttcctgaacccg
gaacgtgtctccatgcccgactttgacgtcgatttctgcatggagaagcgtgaccgcgtg
atcgattacgtggccgagcgctacgggcgcaacgcggtctcgcagatcgtcacctttggc
accatggccgccaaggccgtggtgcgtgacgtggcgcgtgcccagggcaagccctactcg
ctgggcgacaagctctccaagctgattcccttcgaggtcggcatcacgctcgagaaggcc
atcgagcaggagccgcagctcaaggaattcatcgacaacgacgaggaagcccaggaaatc
tgggagatggcgctcaagctcgagggcaccacgcgcggcaccggcaagcacgccggcggc
gtggtgatcgcgccgaccaagctgaccgacttcgcgccgctgctgtgtgatgaagacggc
agcggtctggtggtccagttcgacaagaacgacgtcgaggaggccgggctggtcaagttc
gacttcctgggtctgcgcaccctgaccatcatcgactgggcgaccgagatggtcgacaag
atccgtgagcgggaagggctggcgccgctggatatcgatgacatcccgctggatgacgcc
aagaccttcgacatgctgcagaaggcggagacgacggccgtcttccagctggaatcccgc
ggcatgaaggagctgatcaagaagctcaagcccgactgcctggaagacatgatcgccttg
gtggccctgttccgtcccggcccgctgcagtccggcatggtggatgacttcatcaaccgc
aagcacggtcgttccgaagtgtcttatccacacccggattaccagcatgagctgctcaag
ccggtactggagccgacctacggcatcatcctgtaccaggagcaggtcatgcagatcgcg
caggtgctggccggctatacgctgggtcaggccgacatgctgcgccgcgcgatgggcaag
aagaagccggaagagatggccaagcagcgcgccggcttcatggaaggctgtgcgggcaag
ggcatcgacaaggacctggccggcaacatcttcgacctggtggagaaattcgccggttac
ggcttcaacaagtcgcactcggcggcctatggtctggtttcctaccagaccggctggctg
aaggcgcactatccggggccgttcatggccgcggtgatctcgaccgagatgcagaccatc
gagaaggtggtgccgctgatcgaggagtgccgccatatcggcctcacggtcacgccgccg
gatgtgaacatcggcggctacaagttcaccgtcgacctggaagggcgcgtcgtctacggc
ctgggcgccattcgcggcgtcggcgagggcccgatcgatgccatcgtcagcgcgcgcgcc
gagggtggcccgttcagcgacatcttcgatttctgcaagcgcatcgacgccaagaagatc
aacaagcgcaccttggaagcgctgatccgctccggcgcgctggacaacatcggcccgtcg
cgtgcggtgctgatgctggcggtggaggatgcgctcaaggccgcctcccagaatcacgcc
aacaatgatgtcggcatcaccgacatgttcggcgatgccttcagcgagccggaaaccgat
gtctacgccggctatcgcaaggcccgcgagtggaccgacaaggagcgcctcaccggcgag
aaggacactctggggctttatctgaccggccatcccatcgatgagtacgagggtgagctc
aagcgcttcatcaatgcgcgcatcagtgatctgaagccgtcgcgtgagccgcagcgcatc
gccgggctggtgatcgccatgcgcaccatgaagtccaagcggggcgacaccatggccttc
gtgaccctggatgaccgcaccgggcgcatcgaggcctcgatgttcggtgagctctacgat
caggtgcgcaacaagctggtgcctgacagcgtggtgatcgtcgagggcgaggtcagccag
gatgactactccggtggcctgcgtctgcgcggcaaggacgtcacgccgatcatcgatgcg
cgggcgcgcttcggtgaggcggtcgagatgagcatcgccgccgaggacatcggcggtcgc
ttcacccagcagctgaccaccttgctgacgccacacctggccagtgaaggcctgccgatg
cgcctgcgttatcgcaacgccgcggcggaggcctggctggagctgggcgagcaatggcgc
gttgcgcccagtgatgagttgttgatccagctgggtgaggtggaaggccagcgcggtgtg
cgcctcaagtaccgtgagtga
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