Cobetia sp. D5: U0O11_16150
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Entry
U0O11_16150 CDS
T10202
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
cobd Cobetia sp. D5
Pathway
cobd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cobd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
U0O11_16150 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cobd03400
]
U0O11_16150 (sbcB)
Enzymes [BR:
cobd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
U0O11_16150 (sbcB)
DNA repair and recombination proteins [BR:
cobd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
U0O11_16150 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
U0O11_16150 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U0O11_16150 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WVS98353
LinkDB
All DBs
Position
complement(3907368..3908843)
Genome browser
AA seq
491 aa
AA seq
DB search
MAEPTFLWHDYETFGADPRRDRPSQFAAIRTDADFNEVGEPLTLYCKPADDFLPQPMACL
ITGITPQQAERRGIPEAEFAGRINDEMSVPGTCTLGYNSLRFDDEVSRHLFYRNFLDPYG
REWQNGNSRWDLIDVVRAFHALRPEGIEWPKREDGAPSFRLEHLTAANGIEHAGAHDALV
DVRATIALARLLKSRNARLFDYLLKLRNKRHVASLLDIGARKPMLHISRRYPASRACGAL
VVPLAEHPSNANGVIVYDLSVDPAPLMELSPEEIRARVFASADDLAEGEERIPLKVIHLN
KSPVLLPANALKDVSGPHEGEYGEIAARFKIDPAQCRVHWKWLKDNAGVGAKVAQVFAEA
PPAGPADPDLMLYSGGFFSPADRKEMERVRATHPEALDDTPFAFQDGRLEEMLFRYRARS
YGYTLNSAERERWEQWRWERMNDEQVASLTVKGFVSEIQRLAQSEQDPDRVQILEELAMY
VEGIMPPQAFG
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
gtggcagagcccaccttcctgtggcacgactacgagaccttcggcgccgacccgcgccgt
gaccgtccttcgcagttcgcggccatccgtaccgatgctgacttcaatgaggtcggcgag
ccgctgaccctctattgcaagccggccgatgacttcctgccccagccgatggcgtgtctg
atcaccggcatcaccccgcagcaggccgagcgtcgcggcattcccgaggccgagttcgcc
gggcgcatcaatgatgagatgagcgtgccggggacctgcacgctgggctacaacagcctg
cgcttcgatgatgaagtcagtcgtcatctgttctaccgcaacttcctcgacccctacggg
cgtgagtggcagaacggcaattcgcgctgggacctgatcgatgtcgtgcgcgccttccat
gccctgcgcccggaaggcatcgaatggcccaagcgtgaagatggtgcgcccagcttccgt
ctggagcatctgacggcggccaatggcatcgagcacgccggcgcgcatgacgcgctggtg
gacgtgcgcgccaccatcgcgctggcacgcctgctcaagtcgcgcaatgcgcgcctgttc
gattacctgctaaagctgcgcaacaagcgccatgtcgccagtctgctggatatcggcgca
cgcaagccgatgctgcacatctcgcgtcgctatccggcctcgcgggcctgtggcgcgctg
gtggtgccgctggcggagcatccttcgaatgccaatggcgtgatcgtctatgacctctcg
gtcgacccggcgccgttgatggagctgtcaccggaagagatacgtgcccgtgtcttcgcc
agtgccgatgacctcgcggaaggcgaggagcggattccgctcaaggtcatccatctcaac
aagagtccggtgctgctgccggccaatgcgctcaaggatgtgtccgggccgcatgagggc
gagtacggcgagatcgccgcgcgcttcaagatcgaccccgcccagtgtcgcgtgcactgg
aagtggctgaaggacaacgccggtgtcggcgccaaggtggcgcaggtgttcgccgaggcg
ccgccggccggcccggctgatccggacctgatgctctattccggcggcttcttctcgccc
gcggaccgcaaggagatggagcgggtgcgcgccacccatcccgaggcgctcgacgatacg
cctttcgccttccaggatggtcggctcgaggagatgctgttccgctatcgtgcgcgcagc
tacggctacacgctcaactccgccgagcgcgaacgctgggagcagtggcgttgggagcgc
atgaacgatgagcaggtcgcgagcctgaccgtgaagggcttcgtcagcgagatccagcgg
ctggcccagagcgagcaggacccggaccgcgtgcagattctcgaagaactggcgatgtac
gtggaaggcatcatgccgccgcaggccttcggctga
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