KEGG   Cobetia sp. AM6: CLAM6_02340
Entry
CLAM6_02340       CDS       T08724                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
cobe  Cobetia sp. AM6
Pathway
cobe03030  DNA replication
cobe03410  Base excision repair
cobe03420  Nucleotide excision repair
cobe03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cobe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CLAM6_02340
   03410 Base excision repair
    CLAM6_02340
   03420 Nucleotide excision repair
    CLAM6_02340
   03440 Homologous recombination
    CLAM6_02340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cobe03032]
    CLAM6_02340
   03400 DNA repair and recombination proteins [BR:cobe03400]
    CLAM6_02340
Enzymes [BR:cobe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CLAM6_02340
DNA replication proteins [BR:cobe03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CLAM6_02340
DNA repair and recombination proteins [BR:cobe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     CLAM6_02340
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CLAM6_02340
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1
Other DBs
NCBI-ProteinID: BBO54923
UniProt: A0A5K7Y0P1
LinkDB
Position
257061..259949
AA seq 962 aa
MAATPIVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVINMLKSLIRQYPDSPMAVVFD
AKGKTFRDDMYPEYKAQRPPMPDDLRLQVEPLHACVRALGLPLLCVEGVEADDVIGTLAR
MATEAGRDAVISTGDKDMAQLVNEHITLVNTMKNETLDVDGVTEKFGIPPNLIIDFLALM
GDKVDNIPGVPGVGEKTALGLLQGMEGGLDTIYGDLDRIKTLSFRGAKTLAKKMEAHRED
AYLSYRLATIKLDCELEYGLDDLAIAAPDTAALVELYKEMEFRAWLKELLEGGDMAATPH
ADEKDSGVAGSDLFGDSIAPVAEKASGKGKTAAAPTPDLEAAEEGDEMPDALPPREERNY
RAITEQAELDAWLERVRNANSLCFDLETTSLNYMEAEIVGIGMALEVGEAVYIPVAHSYL
DAPAQLQRQAVLEALTPILADTAITKIGQNLKYDIEVLARYDIAVAGPLADTMLMSYVLN
STATRHDMDSLALKYLGESTISFTDIAGKGAKQLTFDQIALEEAMPYACEDVDITLRLAA
LLMPRIEKLGRLDEVLRQFEYPLIPVLARIERNGVAIDPERLHVQTRELTEQIHDIEKQA
FELAGREFNLSSPKQLGEILFEEQKLPVKKKTPKGAPSTAEAVLEELALDYPLPKLIMRH
RGMTKLKSTYTDKLPQLVNPTTRRLHTSYHQAVTATGRLSSSDPNLQNIPVRSDEGRRIR
QAFIARPGYRIVAADYSQIELRIMAHLSGDKGLLSAFADNRDVHAATAAEVFGTEEARVT
SDQRRSAKAINFGLIYGMSAWGLSRQLDIEPGQAKTYIERYFERYPGVATYMEDTRQLAA
EQGYVETIFGRRLYLPEIGSRNHARRSAAERTAINAPMQGSAADIIKRAMIDVDAWLAGS
DGVDRYDAMMVMQVHDELVFEVAEAQVDAFMKDVAQRMQNAASLDVPLLVEVEQGDNWEE
AH
NT seq 2889 nt   +upstreamnt  +downstreamnt
atggccgccacgccgatcgttctcgtcgatggatcttcctatctctatcgtgcctttcat
gctctgccgccgctgaccacctccaagggcctgcccaccggcgcggtgaagggcgtgatc
aacatgctcaagagcctgattcgccagtacccggacagccccatggcggtggtcttcgat
gccaagggcaagaccttccgcgacgacatgtacccggagtacaaggcccagcgcccgccg
atgccggatgacctgcgcctgcaggtcgagccgctgcatgcctgcgtgcgtgcccttggc
ctgcccctgctgtgcgtggaaggcgtcgaggccgatgacgtcatcggcaccctggcgcgc
atggcgaccgaggccgggcgtgacgccgtcatctccaccggcgacaaggacatggcccag
ctggtgaacgagcacatcaccctggtcaacaccatgaagaacgagacgctggacgtggac
ggcgtcaccgagaagttcggcattccgccgaacctgatcatcgatttcctcgcgctgatg
ggcgacaaggtcgacaacattcccggcgtgccgggcgtgggcgagaagaccgcgctgggc
ctgctgcaaggcatggaaggcggcctcgacaccatctacggcgatctcgatcgcatcaag
acgctcagcttccgtggcgccaagaccctggccaagaagatggaagcgcatcgcgaagat
gcctatctctcctaccgtctcgccaccatcaagctggactgcgagctggaatatggcctg
gatgacctcgcgatcgccgcgccggacaccgccgcgctggtcgagctctacaaggagatg
gaattccgcgcctggctgaaggagctgctggaaggcggtgacatggcggccacgccgcat
gccgatgagaaggacagcggagtcgccggcagtgacctgttcggtgacagcatcgcgccg
gtcgctgaaaaggcctcaggcaagggcaagaccgccgctgcgccaacgcctgatctggaa
gcggcggaagagggcgatgagatgcccgatgcgctgccgccgcgtgaggagcgcaactac
cgcgccatcaccgagcaggccgagctggatgcgtggctcgagcgcgtgcgcaacgccaac
tcgctgtgcttcgatctcgagaccaccagcctcaactacatggaagccgagatcgtcggt
atcggcatggcgctggaagtcggcgaggccgtctacattcccgtcgctcacagctatctg
gatgcccccgcgcagctgcagcgccaggccgtgctggaagcgctgacgccgattctcgcc
gataccgccatcaccaagatcggccagaacctcaagtacgacatcgaggtgctggcgcgc
tatgacatcgcggtggccggcccgctggccgacaccatgctgatgtcctacgtgctcaat
tccaccgcgacccgtcacgacatggactcgctggcgctcaagtatctgggcgagagcacc
atcagcttcaccgacatcgccggcaagggcgccaagcagctgacgtttgatcagatcgcg
ctggaagaggcgatgccgtatgcctgcgaggatgtcgacatcaccctgcgcctcgccgcg
ctgctgatgccgcgcatcgagaagctgggacgtctggatgaagtgctgcgtcagttcgaa
tatccgctgattccggtgttggcacgcatcgagcgcaacggcgtcgcgatcgaccccgag
cgcctgcacgtccagacccgcgagctgaccgagcagatccacgacatcgagaagcaggcc
ttcgagcttgcgggccgcgaattcaacctctcttcgcccaagcagctgggcgagatcctc
ttcgaggagcagaagctgccggtcaagaagaagacgcccaagggcgcgccgtccaccgcc
gaagcggtgcttgaggagctggcgctggactacccgctgcccaagctgatcatgcgccat
cgcggcatgaccaagctcaagagcacctacaccgacaagctgccgcagctggtcaacccg
accacgcgtcgcctgcacaccagctaccatcaggccgtcaccgccacggggcgtctgtcg
tcgtctgatccgaacctgcagaacatcccggtacgcagtgacgaggggcgtcgtatccgt
caggccttcatcgcgcgccccggctatcgtatcgtcgcggcggattactcgcagatcgag
ctgcgcatcatggcgcacctctccggtgacaagggtctgctttcggccttcgccgataac
cgcgacgtgcacgccgccaccgccgctgaagtcttcggcaccgaggaagcgcgtgtcacc
agtgaccagcgccgcagtgccaaggccatcaacttcgggctgatctacggcatgtccgcc
tggggcctctcgcgccagctggatatcgaacccggccaggccaagacctacatcgagcgc
tacttcgagcgttatccgggtgtcgccacctacatggaagacacgcgtcagctcgccgcc
gagcagggctacgtcgagaccatcttcggccgtcgcctctacctgccggaaatcggctca
cgcaatcacgcgcgtcgcagcgctgccgaacgcaccgccatcaacgccccgatgcaaggc
agcgccgccgacatcatcaagcgcgccatgatcgacgtggatgcctggctggcgggcagc
gacggtgtcgacagatacgacgccatgatggtcatgcaggtacacgatgaactcgtcttc
gaagtcgccgaagcgcaggtcgacgccttcatgaaagacgtcgcgcagcgcatgcagaat
gccgcctccctcgatgtcccgctgctcgtcgaagtcgagcaaggcgacaactgggaagaa
gcgcattaa

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